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World-2DPAGE Repository (NIBR 2D-PAGE)

A public standards-compliant repository for gel-based proteomics data published in the literature



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Searching in 'World-2DPAGE Repository (NIBR 2D-PAGE)' for entry matching: P61108




World-2DPAGE Repository (NIBR 2D-PAGE):  P61108


P61108


General information about the entry
View entry in simple text format
Entry nameDEOC1_STAAM
Primary accession numberP61108
integrated into NIBR 2D-PAGE on December 7, 2005 (release 1)
2D Annotations were last modified onDecember 19, 2007 (version 3)
General Annotations were last modified on December 19, 2007 (version 3)
Name and origin of the protein
DescriptionDeoxyribose-phosphate aldolase 1 (EC 4.1.2.4) (Phosphodeoxyriboaldolase 1) (Deoxyriboaldolase 1) (DERA 1).
Gene nameName=deoC1
Synonyms=dra
OrderedLocusNames=SAV0138
Annotated speciesStaphylococcus aureus (strain Mu50 / ATCC 700699) [TaxID: 158878]
TaxonomyBacteria; Firmicutes; Bacillales; Staphylococcus.
References
[1]   MAPPING ON GEL
PubMed=17370256; DOI=10.1002/pmic.200600925; [NCBI, EBI, Israel, Japan]
Plikat U., Voshol H., Dangendorf Y., Wiedmann B., Devay P., Mueller D., Wirth U., Szustakowski J., Chirn G.W., Inverardi B., Puyang X., Brown K., Kamp H., Hoving S., Ruchti A., Brendlen N., Peterson R., Buco J., Oostrum J., Peitsch M.C.
''From proteomics to systems biology of bacterial pathogens: approaches, tools, and applications''
Proteomics 7(6):992-1003(2007)
2D PAGE maps for identified proteins
How to interpret a protein

STAPHY4-7 {Staphylococcus aureus, pH 4-7}
Staphylococcus aureus (strain Mu50 / ATCC 700699)
STAPHY4-7
  map experimental info
 
STAPHY4-7

MAP LOCATIONS:
pI=4.89; Mw=28000  [identification data]

AREA: SPOT 2081: 1245 [1].
PEAK HEIGHT: SPOT 2081: 11182.667 [1].
STAPH_LSI: SPOT 2081: stapha_lsi_0138 [1].
MAPPING (identification):
SPOT 2081: Peptide mass fingerprinting [1].

Copyright
Data from Dr. Hans Voshol, Novartis Institutes for BioMedical Research, Basel, Switzerland
Cross-references
UniProtKB/Swiss-ProtP61108; DEOC1_STAAM.



External 2D data: Estimated location of the protein on various 2D PAGE maps
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.

SWISS-2DPAGE:
Arabidopsis thaliana
(Mouse-ear cress)

SWISS-2DPAGE:
Dictyostelium discoideum
(Slime mold)

SWISS-2DPAGE:
Escherichia coli

SWISS-2DPAGE:
Homo sapiens
(Human)

SWISS-2DPAGE:
Mus musculus
(Mouse)

SWISS-2DPAGE:
Saccharomyces cerevisiae
(Baker's yeast)

SWISS-2DPAGE:
Staphylococcus aureus
(strain N315)



External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 54.60
Entry nameDEOC1_STAAM
Primary accession numberP61108
Secondary accession number(s) Q99X77
Name and origin of the protein
DescriptionDeoxyribose-phosphate aldolase 1 (EC 4.1.2.4) (Phosphodeoxyriboaldolase 1) (Deoxyriboaldolase 1) (DERA 1)
Gene nameName=deoC1
Synonyms=dra
OrderedLocusNames=SAV0138
KeywordsComplete proteome; Cytoplasm; Lyase; Schiff base.
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBLBA000017; BAB56300.1; -; Genomic_DNA.
RefSeqNP_370662.1; -.
HSSPQ9X1P5; 1O0Y.
GeneID1120097; -.
GenomeReviewsBA000017_GR; SAV0138.
KEGGsav:SAV0138; -.
BioCycSAUR158878:SAV0138-MONOMER; -.
LinkHubP61108; -.
GOGO:0004139; F:deoxyribose-phosphate aldolase activity; IEA:HAMAP.
GOGO:0016052; P:carbohydrate catabolic process; IEA:HAMAP.
HAMAPMF_00114; -; 1.
InterProIPR013785; Aldolase_TIM.
InterProIPR011343; DeoC.
InterProIPR002915; DeoC/AroFGH_arch.
Gene3DG3DSA:3.20.20.70; Aldolase_TIM; 1.
PANTHERPTHR10889; DeoC; 1.
PfamPF01791; DeoC; 1.
PIRSFPIRSF001357; DeoC; 1.
TIGRFAMsTIGR00126; deoC; 1.



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Database constructed and maintained by Christine Hoogland, using the Make2D-DB II package (ver. 2.50.2) from the World-2DPAGE Constellation of the ExPASy web server

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