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World-2DPAGE Repository  Search by  [accession number]  [description, ID or gene]  [author names]  [spot ID / serial number]  [identification methods]  [pI / Mw range]  [combined fields]  Maps  [experimental info]  [protein list]  [graphical interface]      Databases 0001 0002 0003 0004 0005 0006 0007 0008 0009 0010 0011 0012 0014 0017 0018 0019 0020 0021 0022 0023 0024 0026 0027 0029 0030 0031 0032 0034 0035 0036 0037 0038 0039 0040 0042 0043 0044 0046 0047 0050 0051 0053 0054 0056 0059 0061 0062 0063 0066 0068 0069 0076 0077 0080 0084 0085 0088 use 'Ctrl' to select several databases Select Remote Interfaces [All Interfaces] SWISS-2DPAGE World-2DPAGE Portal Exclude local DBs has only effect if a remote interface is selected

Searching in 'World-2DPAGE Repository [0002]' for entry matching: P67248 World-2DPAGE Repository (0002):  P67248 P67248 General information about the entry View entry in simple text format Entry name Y1236_STAAM Primary accession number P67248 integrated into World-2DPAGE Repository (0002) on  December 7, 2005 (release 1) 2D Annotations were last modified on May 1, 2011 (version 2) General Annotations were last modified on  November 14, 2011 (version 2) Name and origin of the protein Description RecName: Full=UPF0122 protein SAV1236;. Gene name OrderedLocusNames=SAV1236 Annotated species Staphylococcus aureus (strain Mu50 / ATCC 700699) [TaxID: 158878] Taxonomy Bacteria; Firmicutes; Bacillales; Staphylococcus. References [1]   MAPPING ON GEL PubMed=17370256; DOI=10.1002/pmic.200600925; [NCBI, EBI, Israel, Japan] Plikat U., Voshol H., Dangendorf Y., Wiedmann B., Devay P., Mueller D., Wirth U., Szustakowski J., Chirn G.W., Inverardi B., Puyang X., Brown K., Kamp H., Hoving S., Ruchti A., Brendlen N., Peterson R., Buco J., Oostrum J., Peitsch M.C. ''From proteomics to systems biology of bacterial pathogens: approaches, tools, and applications'' Proteomics 7(6):992-1003 (2007) 2D PAGE maps for identified proteins How to interpret a protein STAPHY4-7 {Staphylococcus aureus, pH 4-7} Staphylococcus aureus (strain Mu50 / ATCC 700699)   map experimental info   STAPHY4-7 MAP LOCATIONS: SPOT 2622: pI=4.91; Mw=8000   [identification data] AREA: SPOT 2622: 767 [1]. PEAK HEIGHT: SPOT 2622: 7425.82 [1]. STAPH_LSI: SPOT 2622: stapha_lsi_1236 [1]. MAPPING (identification): SPOT 2622: Peptide mass fingerprinting [1]. Copyright Data from Dr. Hans Voshol, Novartis Institutes for BioMedical Research, Basel, Switzerland Cross-references UniProtKB/Swiss-Prot P67248; Y1236_STAAM. World-2DPAGE Repository P67248; Y1236_STAAM. 2D PAGE maps for identified proteins How to interpret a protein map You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw. Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly. Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed. External data extracted from UniProtKB/Swiss-Prot Extracted from UniProtKB/Swiss-Prot, release: 2011_10 Entry name Y1236_STAAM Primary accession number P67248 Secondary accession number(s) Q99UN4 Sequence was last modified on  October 11, 2004 (version 1) Annotations were last modified on  October 19, 2011 (version 47) Name and origin of the protein Description RecName: Full=UPF0122 protein SAV1236; Gene name OrderedLocusNames=SAV1236 Encoded on OrderedLocusNames=SAV1236 Keywords 3D-structure; Complete proteome. Copyright Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License Cross-references EMBL BA000017; BAB57398.1; -; Genomic_DNA RefSeq NP_371760.1; NC_002758.2; . PDB 1XSV; X-ray; 1.70 A; A/B=1-110 PDBsum 1XSV; -; . ProteinModelPortal P67248; -; . SMR P67248; 5-110; . STRING P67248; -; . World-2DPAGE 0002:P67248; -; . EnsemblBacteria EBSTAT00000006969; EBSTAP00000006787; EBSTAG00000006968; . GeneID 1121213; -; . GenomeReviews BA000017_GR; SAV1236; . KEGG sav:SAV1236; -; . eggNOG COG2739; -; . GeneTree EBGT00050000024491; -; . HOGENOM HBG427419; -; . OMA KSYMSLY; -; . ProtClustDB PRK00118; -; . BioCyc SAUR158878:SAV1236-MONOMER; -; . GO GO:0003677; F:DNA binding; IEA:InterPro; . GO GO:0003700; F:sequence-specific DNA binding transcription factor activity; IEA:InterPro; . GO GO:0016987; F:sigma factor activity; IEA:InterPro; . GO GO:0006352; P:transcription initiation; DNA-dependent; IEA:InterPro HAMAP MF_00245; UPF0122; 1; - InterPro IPR013324; RNA_pol_sigma_r3_r4; . InterPro IPR007394; UPF0122; . InterPro IPR011991; WHTH_trsnscrt_rep_DNA-bd; . Gene3D G3DSA:1.10.10.10; Wing_hlx_DNA_bd; 1; . Pfam PF04297; UPF0122; 1; . SUPFAM SSF88659; Sigma_r3_r4; 1; . World-2DPAGE Repository (search AC)