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SWISS-2DPAGE 
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Sample Preparation and Post-separation Analysis



Searching in 'SWISS-2DPAGE' for entry matching: P0A6L0




SWISS-2DPAGE:  P0A6L0


P0A6L0


General information about the entry
View entry in simple text format
Entry nameDEOC_ECOLI
Primary accession numberP0A6L0
Secondary accession number(s) P00882
integrated into SWISS-2DPAGE on April 1, 2000 (release 12)
2D Annotations were last modified onMay 15, 2003 (version 1)
General Annotations were last modified on May 19, 2011 (version 9)
Name and origin of the protein
DescriptionRecName: Full=Deoxyribose-phosphate aldolase; Short=DERA; EC=4.1.2.4; AltName: Full=2-deoxy-D-ribose 5-phosphate aldolase; AltName: Full=Phosphodeoxyriboaldolase; Short=Deoxyriboaldolase;.
Gene nameName=deoC
Synonyms=dra, thyR
OrderedLocusNames=b4381, JW4344
Annotated speciesEscherichia coli [TaxID: 562]
TaxonomyBacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.
References
[1]   MAPPING ON GEL
PubMed=11680886; [NCBI, Expasy, EBI, Israel, Japan]
Tonella L., Hoogland C., Binz P.-A., Appel R.D., Hochstrasser D.F., Sanchez J.-C.
''''''New perspectives in the Escherichia coli proteome investigation'';'';''
Proteomics 1(1):409-423(2001)
2D PAGE maps for identified proteins
How to interpret a protein

ECOLI5-6 {Escherichia coli(5-6)}
Escherichia coli
ECOLI5-6
  map experimental info
  protein estimated location
 
ECOLI5-6

MAP LOCATIONS:
pI=5.52; Mw=33657  [identification data]

MAPPING (identification):
Peptide mass fingerprinting [1].

Copyright
This SWISS-2DPAGE entry is copyright the Swiss Institute of Bioinformatics. There are no restrictions on its use by non-profit institutions as long as its content is in no way modified and this statement is not removed. Usage by and for commercial entities requires a license agreement (See http://world-2dpage.expasy.org/swiss-2dpage/docs/license.html or send email from legal@sib.swiss).
Cross-references
UniProtKB/Swiss-ProtP0A6L0; DEOC_ECOLI.
2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_10
Entry nameDEOC_ECOLI
Primary accession numberP0A6L0
Secondary accession number(s) P00882 Q2M5T6
Sequence was last modified on March 29, 2005 (version 1)
Annotations were last modified on October 19, 2011 (version 64)
Name and origin of the protein
DescriptionRecName: Full=Deoxyribose-phosphate aldolase; Short=DERA; EC=4.1.2.4; AltName: Full=2-deoxy-D-ribose 5-phosphate aldolase; AltName: Full=Phosphodeoxyriboaldolase; Short=Deoxyriboaldolase;
Gene nameName=deoC
Synonyms=dra, thyR
OrderedLocusNames=b4381, JW4344
Encoded onName=deoC; Synonyms=dra, thyR; OrderedLocusNames=b4381, JW4344
Keywords3D-structure; Acetylation; Complete proteome; Cytoplasm; Lyase; Reference proteome; Schiff base.
Copyright
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBLX03224; CAA26974.1; -; Genomic_DNA
EMBLU14003; AAA97277.1; -; Genomic_DNA
EMBLU00096; AAC77334.1; -; Genomic_DNA
EMBLAP009048; BAE78370.1; -; Genomic_DNA
PIRA01102; ADECD; .
RefSeqNP_418798.1; NC_000913.2; .
PDB1JCJ; X-ray; 1.10 A; A/B=1-259
PDB1JCL; X-ray; 1.05 A; A/B=1-259
PDB1KTN; X-ray; 1.40 A; A/B=1-250
PDB1P1X; X-ray; 0.99 A; A/B=1-259
PDBsum1JCJ; -; .
PDBsum1JCL; -; .
PDBsum1KTN; -; .
PDBsum1P1X; -; .
ProteinModelPortalP0A6L0; -; .
SMRP0A6L0; 1-250; .
IntActP0A6L0; 8; .
SWISS-2DPAGEP0A6L0; -; .
EnsemblBacteriaEBESCT00000002209; EBESCP00000002209; EBESCG00000001811; .
EnsemblBacteriaEBESCT00000014918; EBESCP00000014209; EBESCG00000013978; .
GeneID948902; -; .
GenomeReviewsAP009048_GR; JW4344; .
GenomeReviewsU00096_GR; b4381; .
KEGGecj:JW4344; -; .
KEGGeco:b4381; -; .
EchoBASEEB0217; -; .
EcoGeneEG10221; deoC; .
eggNOGCOG0274; -; .
GeneTreeEBGT00050000009706; -; .
HOGENOMHBG636421; -; .
OMAFELVKQC; -; .
ProtClustDBPRK05283; -; .
BioCycEcoCyc:DEOXYRIBOSE-P-ALD-MONOMER; -; .
BioCycMetaCyc:DEOXYRIBOSE-P-ALD-MONOMER; -; .
GenevestigatorP0A6L0; -; .
GOGO:0005829; C:cytosol; IDA:UniProtKB; .
GOGO:0016020; C:membrane; IDA:UniProtKB; .
GOGO:0004139; F:deoxyribose-phosphate aldolase activity; IDA:EcoliWiki; .
GOGO:0016052; P:carbohydrate catabolic process; IDA:EcoliWiki; .
GOGO:0009264; P:deoxyribonucleotide catabolic process; IMP:EcoliWiki; .
GOGO:0015949; P:nucleobase-containing small molecule interconversion; IMP:EcoliWiki; .
HAMAPMF_00592; DeoC_type2; 1; -
InterProIPR013785; Aldolase_TIM; .
InterProIPR011343; DeoC; .
InterProIPR002915; DeoC/AroFGH_arch; .
InterProIPR023649; DeoC_bac; .
Gene3DG3DSA:3.20.20.70; Aldolase_TIM; 1; .
PANTHERPTHR10889; DeoC; 1; .
PfamPF01791; DeoC; 1; .
PIRSFPIRSF001357; DeoC; 1; .
TIGRFAMsTIGR00126; DeoC; 1; .



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Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the Expasy web server