resource logo

SWISS-2DPAGE

Attention: World-2DPAGE is no longer maintained.


SWISS-2DPAGE 
Search by  [accession number] *
[description, ID or gene] 
[author names] 
[spot ID / serial number] 
[identification methods] 
[pI / Mw range] 
[combined fields] 

Maps  [experimental info] 
[protein list] 
[graphical interface]

     Select Remote Interfaces
[All Interfaces]
World-2DPAGE Portal
World-2DPAGE Repository

Exclude local DBs
has only effect if a remote
interface is selected
     

Sample Preparation and Post-separation Analysis



Searching in 'SWISS-2DPAGE' for entry matching: Q9NR30




SWISS-2DPAGE:  Q9NR30


Q9NR30


General information about the entry
View entry in simple text format
Entry nameDDX21_HUMAN
Primary accession numberQ9NR30
integrated into SWISS-2DPAGE on May 15, 2003 (release 16)
2D Annotations were last modified onMay 15, 2003 (version 1)
General Annotations were last modified on May 19, 2011 (version 6)
Name and origin of the protein
DescriptionRecName: Full=Nucleolar RNA helicase 2; EC=3.6.4.13; AltName: Full=DEAD box protein 21; AltName: Full=Gu-alpha; AltName: Full=Nucleolar RNA helicase Gu; AltName: Full=Nucleolar RNA helicase II; AltName: Full=RH II/Gu;.
Gene nameName=DDX21
Annotated speciesHomo sapiens (Human) [TaxID: 9606]
TaxonomyEukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
References
[1]   MAPPING ON GEL
PubMed=12429849; [NCBI, Expasy, EBI, Israel, Japan]
Scherl A., Coute Y., Deon C., Calle A., Kindbeiter K., Sanchez J.-C., Greco A., Hochstrasser D.F., Diaz J.-J.
''''''Functional proteomic analysis of human nucleolus'';'';''
Mol. Biol. Cell. 13(1):4100-4109(2002)
2D PAGE maps for identified proteins
How to interpret a protein

NUCLEOLI_HELA_1D_HUMAN {SDS-PAGE of nucleolar proteins from Human HeLa cells}
Homo sapiens (Human)
Tissue: Cervix carcinoma
NUCLEOLI_HELA_1D_HUMAN
  map experimental info
  protein estimated location
 
NUCLEOLI_HELA_1D_HUMAN

MAP LOCATIONS:
Mw=96301  [identification data]
Mw=90286  [identification data]
Mw=87069  [identification data]
Mw=85677  [identification data]
Mw=73806  [identification data]

MAPPING (identification):
Tandem mass spectrometry [1];
BAND 1D-001V7Z: PEPTIDE MASS FINGERPRINTING [1].

Copyright
This SWISS-2DPAGE entry is copyright the Swiss Institute of Bioinformatics. There are no restrictions on its use by non-profit institutions as long as its content is in no way modified and this statement is not removed. Usage by and for commercial entities requires a license agreement (See http://world-2dpage.expasy.org/swiss-2dpage/docs/license.html or send email from legal@sib.swiss).
Cross-references
UniProtKB/Swiss-ProtQ9NR30; DDX21_HUMAN.
2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_10
Entry nameDDX21_HUMAN
Primary accession numberQ9NR30
Secondary accession number(s) B2RDL0 Q13436 Q5VX41 Q68D35
Sequence was last modified on September 27, 2005 (version 5)
Annotations were last modified on October 19, 2011 (version 126)
Name and origin of the protein
DescriptionRecName: Full=Nucleolar RNA helicase 2; EC=3.6.4.13; AltName: Full=DEAD box protein 21; AltName: Full=Gu-alpha; AltName: Full=Nucleolar RNA helicase Gu; AltName: Full=Nucleolar RNA helicase II; AltName: Full=RH II/Gu;
Gene nameName=DDX21
Encoded onName=DDX21
KeywordsAcetylation; Alternative splicing; ATP-binding; Complete proteome; Direct protein sequencing; Helicase; Hydrolase; Nucleotide-binding; Nucleus; Phosphoprotein; Polymorphism; Reference proteome; Repeat; RNA-binding.
Copyright
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBLU41387; AAB02546.1; ALT_INIT; mRNA
EMBLAF261903; -; NOT_ANNOTATED_CDS; Genomic_DNA
EMBLAF261917; AAF78930.2; -; Genomic_DNA
EMBLAF261904; AAF78930.2; JOINED; Genomic_DNA
EMBLAF261905; AAF78930.2; JOINED; Genomic_DNA
EMBLAF261906; AAF78930.2; JOINED; Genomic_DNA
EMBLAF261907; AAF78930.2; JOINED; Genomic_DNA
EMBLAF261908; AAF78930.2; JOINED; Genomic_DNA
EMBLAF261909; AAF78930.2; JOINED; Genomic_DNA
EMBLAF261910; AAF78930.2; JOINED; Genomic_DNA
EMBLAF261911; AAF78930.2; JOINED; Genomic_DNA
EMBLAF261912; AAF78930.2; JOINED; Genomic_DNA
EMBLAF261913; AAF78930.2; JOINED; Genomic_DNA
EMBLAF261914; AAF78930.2; JOINED; Genomic_DNA
EMBLAF261915; AAF78930.2; JOINED; Genomic_DNA
EMBLAF261916; AAF78930.2; JOINED; Genomic_DNA
EMBLAK315585; BAG37957.1; -; mRNA
EMBLCR749598; CAH18395.1; -; mRNA
EMBLAL359844; CAH72377.1; -; Genomic_DNA
EMBLCH471083; EAW54307.1; -; Genomic_DNA
EMBLBC008071; AAH08071.2; -; mRNA
IPIIPI00015953; -; .
IPIIPI00477179; -; .
PIRPC6010; PC6010; .
RefSeqNP_004719.2; NM_004728.2; .
UniGeneHs.223141; -; .
ProteinModelPortalQ9NR30; -; .
SMRQ9NR30; 186-708; .
IntActQ9NR30; 19; .
MINTMINT-231639; -; .
STRINGQ9NR30; -; .
PhosphoSiteQ9NR30; -; .
SWISS-2DPAGEQ9NR30; -; .
PeptideAtlasQ9NR30; -; .
PRIDEQ9NR30; -; .
EnsemblENST00000354185; ENSP00000346120; ENSG00000165732; .
GeneID9188; -; .
KEGGhsa:9188; -; .
UCSCuc001jov.1; human; .
UCSCuc001jow.1; human; .
CTD9188; -; .
GeneCardsGC10P064717; -; .
H-InvDBHIX0008880; -; .
HGNCHGNC:2744; DDX21; .
HPAHPA036592; -; .
MIM606357; gene; .
neXtProtNX_Q9NR30; -; .
PharmGKBPA27210; -; .
eggNOGprNOG17017; -; .
GeneTreeENSGT00580000081323; -; .
HOGENOMHBG737336; -; .
HOVERGENHBG051331; -; .
InParanoidQ9NR30; -; .
OMAWQLTVAT; -; .
OrthoDBEOG46143T; -; .
PhylomeDBQ9NR30; -; .
NextBio34453; -; .
ArrayExpressQ9NR30; -; .
BgeeQ9NR30; -; .
CleanExHS_DDX21; -; .
GenevestigatorQ9NR30; -; .
GermOnlineENSG00000165732; Homo sapiens; .
GOGO:0005730; C:nucleolus; TAS:ProtInc; .
GOGO:0005524; F:ATP binding; IEA:UniProtKB-KW; .
GOGO:0004004; F:ATP-dependent RNA helicase activity; TAS:ProtInc; .
GOGO:0003723; F:RNA binding; IEA:UniProtKB-KW; .
InterProIPR014001; DEAD-like_helicase; .
InterProIPR011545; DNA/RNA_helicase_DEAD/DEAH_N; .
InterProIPR012562; GUCT; .
InterProIPR001650; Helicase_C; .
InterProIPR014014; RNA_helicase_DEAD_Q_motif; .
PfamPF00270; DEAD; 1; .
PfamPF08152; GUCT; 1; .
PfamPF00271; Helicase_C; 1; .
SMARTSM00487; DEXDc; 1; .
SMARTSM00490; HELICc; 1; .
PROSITEPS00039; DEAD_ATP_HELICASE; FALSE_NEG; .
PROSITEPS51192; HELICASE_ATP_BIND_1; 1; .
PROSITEPS51194; HELICASE_CTER; 1; .
PROSITEPS51195; Q_MOTIF; 1; .



SWISS-2DPAGE image

SWISS-2DPAGE (search AC)


Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the Expasy web server