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Sample Preparation and Post-separation Analysis



Searching in 'SWISS-2DPAGE' for entry matching: Q08211




SWISS-2DPAGE:  Q08211


Q08211


General information about the entry
View entry in simple text format
Entry nameDHX9_HUMAN
Primary accession numberQ08211
integrated into SWISS-2DPAGE on May 15, 2003 (release 16)
2D Annotations were last modified onMarch 31, 2004 (version 1)
General Annotations were last modified on May 19, 2011 (version 7)
Name and origin of the protein
DescriptionRecName: Full=ATP-dependent RNA helicase A; EC=3.6.4.13; AltName: Full=DEAH box protein 9; AltName: Full=Nuclear DNA helicase II; Short=NDH II;.
Gene nameName=DHX9
Synonyms=DDX9, LKP, NDH2
Annotated speciesHomo sapiens (Human) [TaxID: 9606]
TaxonomyEukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
References
[1]   MAPPING ON GEL
PubMed=12429849; [NCBI, ExPASy, EBI, Israel, Japan]
Scherl A., Coute Y., Deon C., Calle A., Kindbeiter K., Sanchez J.-C., Greco A., Hochstrasser D.F., Diaz J.-J.
''''''Functional proteomic analysis of human nucleolus'';'';''
Mol. Biol. Cell. 13(1):4100-4109(2002)
2D PAGE maps for identified proteins
How to interpret a protein

NUCLEOLI_HELA_1D_HUMAN {SDS-PAGE of nucleolar proteins from Human HeLa cells}
Homo sapiens (Human)
Tissue: Cervix carcinoma
NUCLEOLI_HELA_1D_HUMAN
  map experimental info
  protein estimated location
 
NUCLEOLI_HELA_1D_HUMAN

MAP LOCATIONS:
Mw=110447  [identification data]

MAPPING (identification):
Tandem mass spectrometry [1].

Copyright
This SWISS-2DPAGE entry is copyright the Swiss Institute of Bioinformatics. There are no restrictions on its use by non-profit institutions as long as its content is in no way modified and this statement is not removed. Usage by and for commercial entities requires a license agreement (See http://world-2dpage.expasy.org/swiss-2dpage/docs/license.html or send email from license@isb-sib.ch).
Cross-references
UniProtKB/Swiss-ProtQ08211; DHX9_HUMAN.
2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_10
Entry nameDHX9_HUMAN
Primary accession numberQ08211
Secondary accession number(s) B2RNV4 Q5VY62 Q6PD69 Q99556
Sequence was last modified on October 17, 2006 (version 4)
Annotations were last modified on October 19, 2011 (version 129)
Name and origin of the protein
DescriptionRecName: Full=ATP-dependent RNA helicase A; EC=3.6.4.13; AltName: Full=DEAH box protein 9; AltName: Full=Nuclear DNA helicase II; Short=NDH II;
Gene nameName=DHX9
Synonyms=DDX9, LKP, NDH2
Encoded onName=DHX9; Synonyms=DDX9, LKP, NDH2
Keywords3D-structure; Acetylation; Activator; ATP-binding; Complete proteome; Cytoplasm; Direct protein sequencing; DNA-binding; Helicase; Hydrolase; Methylation; Nucleotide-binding; Nucleus; Phosphoprotein; Polymorphism; Reference proteome; Repeat; RNA-binding.
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBLL13848; AAB48855.1; -; mRNA
EMBLY10658; CAA71668.1; -; mRNA
EMBLAL355999; CAH71701.1; -; Genomic_DNA
EMBLAL662837; CAH71701.1; JOINED; Genomic_DNA
EMBLAL662837; CAI19277.1; -; Genomic_DNA
EMBLAL355999; CAI19277.1; JOINED; Genomic_DNA
EMBLCH471067; EAW91138.1; -; Genomic_DNA
EMBLBC058896; AAH58896.1; -; mRNA
EMBLBC137136; AAI37137.1; -; mRNA
IPIIPI00844578; -; .
RefSeqNP_001348.2; NM_001357.4; .
UniGeneHs.191518; -; .
PDB3LLM; X-ray; 2.80 A; A/B=329-563
PDBsum3LLM; -; .
ProteinModelPortalQ08211; -; .
SMRQ08211; 4-89; 166-260; 329-1114
DIPDIP-31504N; -; .
IntActQ08211; 17; .
MINTMINT-5000572; -; .
STRINGQ08211; -; .
PhosphoSiteQ08211; -; .
SWISS-2DPAGEQ08211; -; .
PRIDEQ08211; -; .
EnsemblENST00000367549; ENSP00000356520; ENSG00000135829; .
GeneID1660; -; .
KEGGhsa:1660; -; .
UCSCuc001gpr.1; human; .
CTD1660; -; .
GeneCardsGC01P154044; -; .
H-InvDBHIX0001404; -; .
HGNCHGNC:2750; DHX9; .
HPACAB011819; -; .
HPAHPA028050; -; .
MIM603115; gene; .
neXtProtNX_Q08211; -; .
HOGENOMHBG444787; -; .
HOVERGENHBG039429; -; .
InParanoidQ08211; -; .
OMANERMLNM; -; .
OrthoDBEOG4HHP1J; -; .
ReactomeREACT_1675; mRNA Processing; .
ReactomeREACT_71; Gene Expression; .
NextBio6832; -; .
PMAP-CutDBQ08211; -; .
ArrayExpressQ08211; -; .
BgeeQ08211; -; .
CleanExHS_DHX9; -; .
GenevestigatorQ08211; -; .
GermOnlineENSG00000135829; Homo sapiens; .
GOGO:0005813; C:centrosome; IDA:UniProtKB; .
GOGO:0070937; C:CRD-mediated mRNA stability complex; IDA:UniProtKB; .
GOGO:0005730; C:nucleolus; IEA:UniProtKB-SubCell; .
GOGO:0005654; C:nucleoplasm; TAS:Reactome; .
GOGO:0030529; C:ribonucleoprotein complex; IDA:UniProtKB; .
GOGO:0005524; F:ATP binding; IEA:UniProtKB-KW; .
GOGO:0004003; F:ATP-dependent DNA helicase activity; TAS:ProtInc; .
GOGO:0004004; F:ATP-dependent RNA helicase activity; TAS:ProtInc; .
GOGO:0003677; F:DNA binding; IEA:UniProtKB-KW; .
GOGO:0003725; F:double-stranded RNA binding; IEA:InterPro; .
GOGO:0005515; F:protein binding; IPI:UniProtKB; .
GOGO:0070934; P:CRD-mediated mRNA stabilization; IMP:UniProtKB; .
GOGO:0000398; P:nuclear mRNA splicing; via spliceosome; TAS:Reactome
InterProIPR014001; DEAD-like_helicase; .
InterProIPR011545; DNA/RNA_helicase_DEAD/DEAH_N; .
InterProIPR002464; DNA/RNA_helicase_DEAH_CS; .
InterProIPR001159; Ds-RNA-bd; .
InterProIPR014720; dsRNA-bd-like; .
InterProIPR011709; DUF1605; .
InterProIPR007502; Helicase-assoc_dom; .
InterProIPR001650; Helicase_C; .
Gene3DG3DSA:3.30.160.20; dsRNA-bd-like; 2; .
PfamPF00270; DEAD; 1; .
PfamPF00035; dsrm; 2; .
PfamPF04408; HA2; 1; .
PfamPF00271; Helicase_C; 1; .
PfamPF07717; OB_NTP_bind; 1; .
SMARTSM00487; DEXDc; 1; .
SMARTSM00358; DSRM; 2; .
SMARTSM00847; HA2; 1; .
SMARTSM00490; HELICc; 1; .
PROSITEPS00690; DEAH_ATP_HELICASE; 1; .
PROSITEPS50137; DS_RBD; 2; .
PROSITEPS51192; HELICASE_ATP_BIND_1; 1; .
PROSITEPS51194; HELICASE_CTER; 1; .



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Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the ExPASy web server