# Make2D-DB II tool # remoteInterfaces.cfg # # remote Make2D-DB II interfaces configuration file # define/overwrite parameters for your web server here # # last edited: 01.09.2011 #===================================================================================# # Define the remote interfaces parameters # -> 'URL', the script address, is required! # -> 'URI', the database home page, is optional, and has effect only if the script URL address differs from the site home page # -> 'database' is optional and has effect only if the remote interface hosts several local databases # ('All' to select all local databases) # -> 'activated' => 1 is required to make the remote interface visible for interactive queries by the user (deactivate with 0) # -> 'integrable' => 1 is required to make the remote interface integrable for cross-linking from other Make2D-DB II databases # (resource should have local databases) # An example of definitions is provided below # Note that adding/activating too many interfaces would slow down your queries # Define and activate here your remote interfaces parameters. # You may also remove those you are not interested in. # Expasy World-2DPAGE Constellation resources # # =========================================== # $SERVER::remoteInterfaceMaster = { 'SWISS-2DPAGE' => { URL => 'http://world-2dpage.expasy.org/swiss-2dpage/', database => ['swiss-2dpage'], activated => 1, integrable => 1 }, 'World-2DPAGE Repository' => { URL => 'http://world-2dpage.expasy.org/repository/', database => ['All'], activated => 1, integrable => 1 }, 'World-2DPAGE Portal' => { URL => 'http://world-2dpage.expasy.org/portal/', database => ['All'], activated => 1, integrable => 0 # no local databases }, # More World-wide databases (deactivated by default) # # ================================================== # '2DBase-Ecoli' => { URL => 'http://2dbase.techfak.uni-bielefeld.de/cgi-bin/2d/2d.cgi', URI => 'http://2dbase.techfak.uni-bielefeld.de/', database => ['All'], activated => 0, integrable => 1 }, # modified version - not integrable (August 2011) 'CIPRO 2D-PAGE' => { URL => 'http://cipro5.ibio.jp/~yonezawa/2d_page/cgi-bin/2d/2d.cgi', # URL => 'http://cipro.ibio.jp/~ueno/2d_page/cgi-bin/2d/2d.cgi', database => ['All'], activated => 0, integrable => 0 }, 'COMPLUYEAST-2DPAGE' => { URL => 'http://compluyeast2dpage.dacya.ucm.es/cgi-bin/2d/2d.cgi', database => ['All'], activated => 0, integrable => 1 }, 'DOSAC-COBS 2D-PAGE' => { URL => 'http://www.dosac.unipa.it/cgi-bin/2d/2d.cgi', URI => 'http://www.dosac.unipa.it/2d/', database => ['All'], activated => 0, integrable => 1 }, 'KAIKO-2DDB' => { URL => 'http://kaiko2ddb.dna.affrc.go.jp/cgi-bin/search_2DDB.cgi', URI => 'http://kaiko2ddb.dna.affrc.go.jp/', database => ['All'], activated => 0, integrable => 1 # even though this DB does not include UniProtKB accession numbers }, # not make2ddb 'PROTICdb' => { URL => 'http://proteus.moulon.inra.fr/proticport/world-2dpage/', URI => 'http://proteus.moulon.inra.fr/proticws/proticdb.php', database => ['All'], format => "proticport", activated => 0, integrable => 0 }, 'REPRODUCTION-2DPAGE' => { URL => 'http://reprod.njmu.edu.cn/cgi-bin/2d/2d.cgi', URI => 'http://reprod.njmu.edu.cn/2d/', database => ['All'], activated => 0, integrable => 1 }, 'SIENA-2DPAGE' => { URL => 'http://www.bio-mol.unisi.it/cgi-bin/2d/2d.cgi', URI => 'http://www.bio-mol.unisi.it/', database => ['All'], activated => 0, integrable => 1 }, 'UCD-2DPAGE' => { URL => 'http://proteomics-portal.ucd.ie:8082/cgi-bin/2d/2d.cgi', database => ['All'], activated => 0, integrable => 1 }, # Unreachable or temporarily unavailable # # ================================================== # # unreachable (August 2011) 'Cornea-2DPAGE' => { URL => 'http://www.daimi.au.dk/cgi-jje/2d/2d.cgi', URI => 'http://www.cornea-proteomics.com/', database => ['All'], activated => 0, integrable => 0 }, # unreachable (October 2008) 'Peroxisomal 2D-PAGE' => { URL => 'http://www.sbc.su.se/~jia/2D/cgi-bin/2d/2d.cgi', URI => 'http://www.sbc.su.se/2DPAGE/', database => ['All'], activated => 0, integrable => 0 }, # unreachable (June 2010) 'Plasmo2DBase' => { URL => 'http://utlab3.biochem.iisc.ernet.in/Plasmo2Dbase/', database => ['All'], activated => 0, integrable => 0 }, };