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World-2DPAGE Repository  Search by  [accession number]  [description, ID or gene]  [author names]  [spot ID / serial number]  [identification methods]  [pI / Mw range]  [combined fields]  Maps  [experimental info]  [protein list]  [graphical interface]      Databases 0001 0002 0003 0004 0005 0006 0007 0008 0009 0010 0011 0012 0014 0017 0018 0019 0020 0021 0022 0023 0024 0026 0027 0029 0030 0031 0032 0034 0035 0036 0037 0038 0039 0040 0042 0043 0044 0046 0047 0050 0051 0053 0054 0056 0059 0061 0062 0063 0066 0068 0069 0076 0077 0080 0084 0085 0088 use 'Ctrl' to select several databases Select Remote Interfaces [All Interfaces] SWISS-2DPAGE World-2DPAGE Portal Exclude local DBs has only effect if a remote interface is selected

Searching in 'World-2DPAGE Repository [0003]' for entry matching: P93014 World-2DPAGE Repository (0003):  P93014 P93014 General information about the entry View entry in simple text format Entry name RR5_ARATH Primary accession number P93014 integrated into World-2DPAGE Repository (0003) on  October 14, 2008 (release 1) 2D Annotations were last modified on May 18, 2011 (version 2) General Annotations were last modified on  November 15, 2011 (version 2) Name and origin of the protein Description RecName: Full=30S ribosomal protein S5, chloroplastic; Flags: Precursor;. Gene name Name=rps5 OrderedLocusNames=At2g33800 ORFNames=T1B8.10 Annotated species Arabidopsis thaliana (Mouse-ear cress) [TaxID: 3702] Taxonomy Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core; eudicotyledons; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. References [1]   MAPPING ON GEL PubMed=18656559; DOI=10.1016/j.jprot.2008.06.012; [NCBI, EBI, Israel, Japan] Maldonado A.M., Echevarria-Zomeno S., Jean-Baptiste S., Hernandez M., Jorrin-Novo J.V. ''Evaluation of three different protocols of protein extraction for Arabidopsis thaliana leaf proteome analysis by two-dimensional electrophoresis'' J. Proteomics 71(4):461-472 (2008) 2D PAGE maps for identified proteins How to interpret a protein PHENOL_2 {Phenol 2} Arabidopsis thaliana (Mouse-ear cress) Tissue: Leaf   map experimental info   PHENOL_2 MAP LOCATIONS: SPOT 87: pI=7.17; Mw=35180   [identification data] IDENTIFICATION: SPOT 87: SeqCov=38%. Mascot (Protein score/CI%=129/100, Total ion score/CI%=18/36.89) [1]. MAPPING (identification): SPOT 87: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1]. TCA-ACETONE_3 {TCA-Acetone 3} Arabidopsis thaliana (Mouse-ear cress) Tissue: Leaf   map experimental info   TCA-ACETONE_3 MAP LOCATIONS: SPOT 87: pI=7.17; Mw=35180   [identification data] IDENTIFICATION: SPOT 87: SeqCov=38%. Mascot (Protein score/CI%=129/100, Total ion score/CI%=18/36.89) [1]. MAPPING (identification): SPOT 87: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1]. TCA-ACETONE-PHENOL_3 {TCA-Acetone-Phenol 3} Arabidopsis thaliana (Mouse-ear cress) Tissue: Leaf   map experimental info   TCA-ACETONE-PHENOL_3 MAP LOCATIONS: SPOT 87: pI=7.17; Mw=35180   [identification data] IDENTIFICATION: SPOT 87: SeqCov=38%. Mascot (Protein score/CI%=129/100, Total ion score/CI%=18/36.89) [1]. MAPPING (identification): SPOT 87: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1]. Copyright Data from Dr. Jesus V. Jorrin-Novo, University of Cordoba, Spain Cross-references UniProtKB/Swiss-Prot P93014; RR5_ARATH. World-2DPAGE Repository P93014; RR5_ARATH. 2D PAGE maps for identified proteins How to interpret a protein map You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw. Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly. Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed. External data extracted from UniProtKB/Swiss-Prot Extracted from UniProtKB/Swiss-Prot, release: 2011_10 Entry name RR5_ARATH Primary accession number P93014 Sequence was last modified on  May 1, 1997 (version 1) Annotations were last modified on  September 21, 2011 (version 77) Name and origin of the protein Description RecName: Full=30S ribosomal protein S5, chloroplastic; Flags: Precursor; Gene name Name=rps5 OrderedLocusNames=At2g33800 ORFNames=T1B8.10 Encoded on Name=rps5; OrderedLocusNames=At2g33800; ORFNames=T1B8.10 Keywords Chloroplast; Complete proteome; Plastid; Reference proteome; Ribonucleoprotein; Ribosomal protein; RNA-binding; rRNA-binding; Transit peptide. Copyright Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License Cross-references EMBL U78721; AAC69132.1; -; Genomic_DNA EMBL CP002685; AEC08888.1; -; Genomic_DNA EMBL AY093289; AAM13288.1; -; mRNA EMBL AY054523; AAK96714.1; -; mRNA EMBL AY087734; AAM65271.1; -; mRNA IPI IPI00526383; -; . PIR G84749; G84749; . RefSeq NP_180936.1; NM_128939.3; . UniGene At.24873; -; . HSSP Q5SHQ5; 1J5E; . ProteinModelPortal P93014; -; . SMR P93014; 110-303; . STRING P93014; -; . World-2DPAGE 0003:P93014; -; . PRIDE P93014; -; . ProMEX P93014; -; . EnsemblPlants AT2G33800.1; AT2G33800.1; AT2G33800; . GeneID 817947; -; . GenomeReviews CT485783_GR; AT2G33800; . KEGG ath:AT2G33800; -; . NMPDR fig|3702.1.peg.10474; -; . GeneFarm 35; -; . TAIR At2g33800; -; . eggNOG KOG0877; -; . HOGENOM HBG299153; -; . InParanoid P93014; -; . OMA TFPHRAD; -; . PhylomeDB P93014; -; . ProtClustDB CLSN2683512; -; . ArrayExpress P93014; -; . Genevestigator P93014; -; . GermOnline AT2G33800; Arabidopsis thaliana; . GO GO:0009570; C:chloroplast stroma; IDA:TAIR; . GO GO:0009535; C:chloroplast thylakoid membrane; IDA:TAIR; . GO GO:0005634; C:nucleus; IDA:TAIR; . GO GO:0015935; C:small ribosomal subunit; IEA:InterPro; . GO GO:0019843; F:rRNA binding; IEA:UniProtKB-KW; . GO GO:0003735; F:structural constituent of ribosome; IEA:InterPro; . GO GO:0046686; P:response to cadmium ion; IEP:TAIR; . GO GO:0009409; P:response to cold; IEP:TAIR; . GO GO:0006412; P:translation; IEA:InterPro; . InterPro IPR014720; dsRNA-bd-like; . InterPro IPR000851; Ribosomal_S5; . InterPro IPR005712; Ribosomal_S5_bac-type; . InterPro IPR005324; Ribosomal_S5_C; . InterPro IPR020568; Ribosomal_S5_D2-typ_fold; . InterPro IPR014721; Ribosomal_S5_D2-typ_fold_subgr; . InterPro IPR013810; Ribosomal_S5_N; . InterPro IPR018192; Ribosomal_S5_N_CS; . Gene3D G3DSA:3.30.160.20; dsRNA-bd-like; 1; . Gene3D G3DSA:3.30.230.10; Ribosomal_S5_D2-type_fold; 1; . PANTHER PTHR13718; Ribosomal_S5; 1; . Pfam PF00333; Ribosomal_S5; 1; . Pfam PF03719; Ribosomal_S5_C; 1; . SUPFAM SSF54211; Ribosomal_S5_D2-typ_fold; 1; . TIGRFAMs TIGR01021; RpsE_bact; 1; . PROSITE PS00585; RIBOSOMAL_S5; 1; . PROSITE PS50881; S5_DSRBD; 1; . World-2DPAGE Repository (search AC)