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Searching in 'World-2DPAGE Repository [0019]' for entry matching: ATPA_RAT




World-2DPAGE Repository (0019):  ATPA_RAT

ATPA_RAT


General information about the entry
View entry in simple text format
Entry nameATPA_RAT
Primary accession numberP15999
integrated into World-2DPAGE Repository (0019) on December 9, 2009 (release 1)
2D Annotations were last modified onMay 30, 2011 (version 2)
General Annotations were last modified on January 13, 2012 (version 2)
Name and origin of the protein
DescriptionRecName: Full=ATP synthase subunit alpha, mitochondrial; Flags: Precursor;.
Gene nameName=Atp5a1
Annotated speciesRattus norvegicus (Rat) [TaxID: 10116]
TaxonomyEukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
References
[1]   2D-PAGE GEL CHARACTERIZATION
DOI=10.1111/j.1471-4159.2010.06719.x;
VanGuilder H.D., Yan H., Farley J.A., Sonntag W.E., Freeman W.M.
''Aging alters the expression of neurotransmission-regulating proteins in the hippocampal synaptoproteome''
J of Neurochemistry 113(6):1577-1588 (2010)
2D PAGE maps for identified proteins
How to interpret a protein

HIPP_SYNAP {Rat hippocampal synaptoproteome}
Rattus norvegicus (Rat)
Tissue: Hippocampus
HIPP_SYNAP
  map experimental info 		 
HIPP_SYNAP

MAP LOCATIONS:
pI=8.28; Mw=55361  [identification data]
pI=9.22; Mw=58904  [identification data]
pI=8.28; Mw=55361  [identification data]
pI=4.95; Mw=51320  [identification data]
pI=7.03; Mw=25639  [identification data]
pI=7.03; Mw=25639  [identification data]
pI=8.28; Mw=55361  [identification data]

IDENTIFICATION: SPOT 411: Peptides number=9. SeqCov=21.7%. MOWSE score=8.35E+8 [1]
SPOT 420: Peptides number=5. SeqCov=11.9%. MOWSE score=5.50E+4 [1]; SPOT 422: Peptides number=12. SeqCov=23.9%. MOWSE score=2.43E+8 [1]; SPOT 438: Peptides number=10. SeqCov=28.7%. MOWSE score=1.25E+6 [1]; SPOT 824: Peptides number=5. SeqCov=15.4%. MOWSE score=2.50E+4 [1]; SPOT 864: Peptides number=4. SeqCov=12.8%. MOWSE score=5.37E+4 [1]; SPOT 1161: Peptides number=10. SeqCov=23%. MOWSE score=1.96E+9 [1].
MAPPING (identification):
SPOT 411: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1];
SPOT 420: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1];
SPOT 422: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1];
SPOT 438: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1];
SPOT 824: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1];
SPOT 864: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1];
SPOT 1161: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1].

Copyright
Data from Dr. Willard Freeman, Penn State College of Medicine, USA
Cross-references
UniProtKB/Swiss-ProtP15999; ATPA_RAT.



2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_12
Entry nameATPA_RAT
Primary accession numberP15999
Secondary accession number(s) Q6P753
Sequence was last modified on December 6, 2005 (version 2)
Annotations were last modified on November 16, 2011 (version 123)
Name and origin of the protein
DescriptionRecName: Full=ATP synthase subunit alpha, mitochondrial; Flags: Precursor;
Gene nameName=Atp5a1
Encoded onName=Atp5a1
Keywords3D-structure; Acetylation; ATP synthesis; ATP-binding; Cell membrane; CF(1); Complete proteome; Direct protein sequencing; Hydrogen ion transport; Ion transport; Membrane; Mitochondrion; Mitochondrion inner membrane; Nucleotide-binding; Phosphoprotein; Reference proteome; Transit peptide; Transport.
Copyright
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBLBC061830; AAH61830.1; -; mRNA
EMBLJ05266; AAA40784.1; -; mRNA
EMBLX56133; CAA39599.1; -; mRNA
IPIIPI00396910; -; .
PIRA35730; A35730; .
RefSeqNP_075581.1; NM_023093.1; .
UniGeneRn.40255; -; .
PDB1MAB; X-ray; 2.80 A; A=44-553
PDB2F43; X-ray; 3.00 A; A=44-553
PDBsum1MAB; -; .
PDBsum2F43; -; .
ProteinModelPortalP15999; -; .
SMRP15999; 66-545; .
IntActP15999; 3; .
MINTMINT-4588311; -; .
STRINGP15999; -; .
PhosphoSiteP15999; -; .
Rat-heart-2DPAGEP15999; -; .
World-2DPAGE0004:P15999; -; .
PRIDEP15999; -; .
GeneID65262; -; .
KEGGrno:65262; -; .
UCSCNM_023093; rat; .
CTD498; -; .
RGD619993; Atp5a1; .
eggNOGroNOG06697; -; .
GeneTreeENSGT00550000074846; -; .
HOVERGENHBG001536; -; .
InParanoidP15999; -; .
OrthoDBEOG4ZCT48; -; .
PhylomeDBP15999; -; .
NextBio614213; -; .
PMAP-CutDBP15999; -; .
ArrayExpressP15999; -; .
GenevestigatorP15999; -; .
GermOnlineENSRNOG00000017032; Rattus norvegicus; .
GOGO:0000275; C:mitochondrial proton-transporting ATP synthase complex; catalytic core F(1); IDA:RGD
GOGO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell; .
GOGO:0043531; F:ADP binding; IDA:RGD; .
GOGO:0005524; F:ATP binding; IDA:RGD; .
GOGO:0046961; F:proton-transporting ATPase activity; rotational mechanism; IEA:InterPro
GOGO:0006172; P:ADP biosynthetic process; IDA:RGD; .
GOGO:0015991; P:ATP hydrolysis coupled proton transport; IEA:InterPro; .
GOGO:0015986; P:ATP synthesis coupled proton transport; IEA:InterPro; .
InterProIPR020003; ATPase_a/bsu_AS; .
InterProIPR005294; ATPase_F1-cplx_asu; .
InterProIPR018118; ATPase_F1/A1-cplx_a/bsu_N; .
InterProIPR023366; ATPase_F1/A1-cplx_a_su_N; .
InterProIPR000793; ATPase_F1/V1/A1-cplx_a/bsu_C; .
InterProIPR004100; ATPase_F1/V1/A1-cplx_a/bsu_N; .
InterProIPR000194; ATPase_F1/V1/A1_a/bsu_nucl-bd; .
Gene3DG3DSA:2.40.30.20; G3DSA:2.40.30.20; 1; .
KOK02132; -; .
PfamPF00006; ATP-synt_ab; 1; .
PfamPF00306; ATP-synt_ab_C; 1; .
PfamPF02874; ATP-synt_ab_N; 1; .
SUPFAMSSF47917; ATPase_a/b_C; 1; .
SUPFAMSSF50615; ATPase_a/b_N; 1; .
TIGRFAMsTIGR00962; AtpA; 1; .
PROSITEPS00152; ATPASE_ALPHA_BETA; 1; .


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Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the ExPASy web server