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Searching in 'World-2DPAGE Repository [0004]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0004):  ATPB_RAT

ATPB_RAT


General information about the entry
View entry in simple text format
Entry nameATPB_RAT
Primary accession numberP10719
integrated into World-2DPAGE Repository (0004) on October 13, 2008 (release 1)
2D Annotations were last modified onMay 18, 2011 (version 2)
General Annotations were last modified on December 22, 2011 (version 2)
Name and origin of the protein
DescriptionRecName: Full=ATP synthase subunit beta, mitochondrial; EC=3.6.3.14; Flags: Precursor;.
Gene nameName=Atp5b
Annotated speciesRattus norvegicus (Rat) [TaxID: 10116]
TaxonomyEukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
References
[1]   MAPPING ON GEL
PubMed=19343716; DOI=10.1002/pmic.200800664; [NCBI, EBI, Israel, Japan]
Maurya D.K., Sundaram C.S., Bhargava P.
''Proteome profile of the mature rat olfactory bulb''
Proteomics 9(1):2593-2599 (2009)
2D PAGE maps for identified proteins
How to interpret a protein

OB21DSUB {2-DE gel for Olfactory bulb proteome}
Rattus norvegicus (Rat)
Tissue: Olfactory bulb
OB21DSUB
  map experimental info 		 
OB21DSUB

MAP LOCATIONS:
pI=4.78; Mw=50000  [identification data]

MAPPING (identification):
SPOT 373: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1].

Copyright
Data from Dr. Purnima Bhargava, Centre for Cellular and Molecular Biology, India
Cross-references
UniProtKB/Swiss-ProtP10719; ATPB_RAT.



2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_12
Entry nameATPB_RAT
Primary accession numberP10719
Secondary accession number(s) Q499W0
Sequence was last modified on April 1, 1990 (version 2)
Annotations were last modified on November 16, 2011 (version 124)
Name and origin of the protein
DescriptionRecName: Full=ATP synthase subunit beta, mitochondrial; EC=3.6.3.14; Flags: Precursor;
Gene nameName=Atp5b
Encoded onName=Atp5b
Keywords3D-structure; Acetylation; ATP synthesis; ATP-binding; CF(1); Complete proteome; Direct protein sequencing; Hydrogen ion transport; Hydrolase; Ion transport; Membrane; Mitochondrion; Mitochondrion inner membrane; Nucleotide-binding; Phosphoprotein; Reference proteome; Transit peptide; Transport.
Copyright
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBLBC099743; AAH99743.1; -; mRNA
EMBLM25301; AAA57154.1; -; mRNA
EMBLM19044; AAB02288.1; ALT_SEQ; mRNA
EMBLM57634; AAA40778.1; -; mRNA
IPIIPI00551812; -; .
PIRA28701; A28701; .
PIRA30160; A30160; .
RefSeqNP_599191.1; NM_134364.1; .
UniGeneRn.92965; -; .
PDB1MAB; X-ray; 2.80 A; B=51-529
PDB2F43; X-ray; 3.00 A; B=51-529
PDBsum1MAB; -; .
PDBsum2F43; -; .
ProteinModelPortalP10719; -; .
SMRP10719; 51-527; .
IntActP10719; 3; .
MINTMINT-4587159; -; .
STRINGP10719; -; .
PhosphoSiteP10719; -; .
UCD-2DPAGEP10719; -; .
World-2DPAGE0004:P10719; -; .
PRIDEP10719; -; .
GeneID171374; -; .
KEGGrno:171374; -; .
UCSCNM_134364; rat; .
CTD506; -; .
RGD621368; Atp5b; .
eggNOGroNOG07745; -; .
HOVERGENHBG004307; -; .
InParanoidP10719; -; .
OrthoDBEOG4ZCT4C; -; .
PhylomeDBP10719; -; .
NextBio622183; -; .
ArrayExpressP10719; -; .
GenevestigatorP10719; -; .
GermOnlineENSRNOG00000002840; Rattus norvegicus; .
GOGO:0000275; C:mitochondrial proton-transporting ATP synthase complex; catalytic core F(1); IDA:RGD
GOGO:0005524; F:ATP binding; IDA:RGD; .
GOGO:0005509; F:calcium ion binding; IDA:RGD; .
GOGO:0046933; F:hydrogen ion transporting ATP synthase activity; rotational mechanism; IEA:InterPro
GOGO:0008553; F:hydrogen-exporting ATPase activity; phosphorylative mechanism; IEA:InterPro
GOGO:0030228; F:lipoprotein particle receptor activity; IDA:RGD; .
GOGO:0006172; P:ADP biosynthetic process; IDA:RGD; .
GOGO:0015991; P:ATP hydrolysis coupled proton transport; IEA:InterPro; .
GOGO:0015986; P:ATP synthesis coupled proton transport; IEA:InterPro; .
InterProIPR020003; ATPase_a/bsu_AS; .
InterProIPR003593; ATPase_AAA+_core; .
InterProIPR005722; ATPase_F1-cplx_bsu; .
InterProIPR018118; ATPase_F1/A1-cplx_a/bsu_N; .
InterProIPR000793; ATPase_F1/V1/A1-cplx_a/bsu_C; .
InterProIPR004100; ATPase_F1/V1/A1-cplx_a/bsu_N; .
InterProIPR000194; ATPase_F1/V1/A1_a/bsu_nucl-bd; .
InterProIPR024034; ATPase_F1_bsu/V1_C; .
Gene3DG3DSA:1.10.1140.10; G3DSA:1.10.1140.10; 1; .
KOK02133; -; .
PANTHERPTHR15184:SF8; ATPase_F1_b; 1; .
PfamPF00006; ATP-synt_ab; 1; .
PfamPF00306; ATP-synt_ab_C; 1; .
PfamPF02874; ATP-synt_ab_N; 1; .
SMARTSM00382; AAA; 1; .
SUPFAMSSF47917; ATPase_a/b_C; 1; .
SUPFAMSSF50615; ATPase_a/b_N; 1; .
TIGRFAMsTIGR01039; AtpD; 1; .
PROSITEPS00152; ATPASE_ALPHA_BETA; 1; .





Searching in 'World-2DPAGE Repository [0019]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0019):  ATPB_RAT

ATPB_RAT


General information about the entry
View entry in simple text format
Entry nameATPB_RAT
Primary accession numberP10719
integrated into World-2DPAGE Repository (0019) on December 9, 2009 (release 1)
2D Annotations were last modified onMay 30, 2011 (version 2)
General Annotations were last modified on January 13, 2012 (version 2)
Name and origin of the protein
DescriptionRecName: Full=ATP synthase subunit beta, mitochondrial; EC=3.6.3.14; Flags: Precursor;.
Gene nameName=Atp5b
Annotated speciesRattus norvegicus (Rat) [TaxID: 10116]
TaxonomyEukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
References
[1]   2D-PAGE GEL CHARACTERIZATION
DOI=10.1111/j.1471-4159.2010.06719.x;
VanGuilder H.D., Yan H., Farley J.A., Sonntag W.E., Freeman W.M.
''Aging alters the expression of neurotransmission-regulating proteins in the hippocampal synaptoproteome''
J of Neurochemistry 113(6):1577-1588 (2010)
2D PAGE maps for identified proteins
How to interpret a protein

HIPP_SYNAP {Rat hippocampal synaptoproteome}
Rattus norvegicus (Rat)
Tissue: Hippocampus
HIPP_SYNAP
  map experimental info 		 
HIPP_SYNAP

MAP LOCATIONS:
pI=4.95; Mw=51320  [identification data]
pI=4.95; Mw=51320  [identification data]
pI=4.92; Mw=51170  [identification data]
pI=4.95; Mw=51320  [identification data]

IDENTIFICATION: SPOT 439: Peptides number=11. SeqCov=30.4%. MOWSE score=4.22E+7 [1]
SPOT 468: Peptides number=11. SeqCov=31%. MOWSE score=1.25E+6 [1]; SPOT 742: Peptides number=12. SeqCov=32.5%. MOWSE score=2.33E+7 [1]; SPOT 806: Peptides number=6. SeqCov=16.4%. MOWSE score=1.92E+4 [1].
MAPPING (identification):
SPOT 439: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1];
SPOT 468: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1];
SPOT 742: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1];
SPOT 806: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1].

Copyright
Data from Dr. Willard Freeman, Penn State College of Medicine, USA
Cross-references
UniProtKB/Swiss-ProtP10719; ATPB_RAT.



2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_12
Entry nameATPB_RAT
Primary accession numberP10719
Secondary accession number(s) Q499W0
Sequence was last modified on April 1, 1990 (version 2)
Annotations were last modified on November 16, 2011 (version 124)
Name and origin of the protein
DescriptionRecName: Full=ATP synthase subunit beta, mitochondrial; EC=3.6.3.14; Flags: Precursor;
Gene nameName=Atp5b
Encoded onName=Atp5b
Keywords3D-structure; Acetylation; ATP synthesis; ATP-binding; CF(1); Complete proteome; Direct protein sequencing; Hydrogen ion transport; Hydrolase; Ion transport; Membrane; Mitochondrion; Mitochondrion inner membrane; Nucleotide-binding; Phosphoprotein; Reference proteome; Transit peptide; Transport.
Copyright
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBLBC099743; AAH99743.1; -; mRNA
EMBLM25301; AAA57154.1; -; mRNA
EMBLM19044; AAB02288.1; ALT_SEQ; mRNA
EMBLM57634; AAA40778.1; -; mRNA
IPIIPI00551812; -; .
PIRA28701; A28701; .
PIRA30160; A30160; .
RefSeqNP_599191.1; NM_134364.1; .
UniGeneRn.92965; -; .
PDB1MAB; X-ray; 2.80 A; B=51-529
PDB2F43; X-ray; 3.00 A; B=51-529
PDBsum1MAB; -; .
PDBsum2F43; -; .
ProteinModelPortalP10719; -; .
SMRP10719; 51-527; .
IntActP10719; 3; .
MINTMINT-4587159; -; .
STRINGP10719; -; .
PhosphoSiteP10719; -; .
UCD-2DPAGEP10719; -; .
World-2DPAGE0004:P10719; -; .
PRIDEP10719; -; .
GeneID171374; -; .
KEGGrno:171374; -; .
UCSCNM_134364; rat; .
CTD506; -; .
RGD621368; Atp5b; .
eggNOGroNOG07745; -; .
HOVERGENHBG004307; -; .
InParanoidP10719; -; .
OrthoDBEOG4ZCT4C; -; .
PhylomeDBP10719; -; .
NextBio622183; -; .
ArrayExpressP10719; -; .
GenevestigatorP10719; -; .
GermOnlineENSRNOG00000002840; Rattus norvegicus; .
GOGO:0000275; C:mitochondrial proton-transporting ATP synthase complex; catalytic core F(1); IDA:RGD
GOGO:0005524; F:ATP binding; IDA:RGD; .
GOGO:0005509; F:calcium ion binding; IDA:RGD; .
GOGO:0046933; F:hydrogen ion transporting ATP synthase activity; rotational mechanism; IEA:InterPro
GOGO:0008553; F:hydrogen-exporting ATPase activity; phosphorylative mechanism; IEA:InterPro
GOGO:0030228; F:lipoprotein particle receptor activity; IDA:RGD; .
GOGO:0006172; P:ADP biosynthetic process; IDA:RGD; .
GOGO:0015991; P:ATP hydrolysis coupled proton transport; IEA:InterPro; .
GOGO:0015986; P:ATP synthesis coupled proton transport; IEA:InterPro; .
InterProIPR020003; ATPase_a/bsu_AS; .
InterProIPR003593; ATPase_AAA+_core; .
InterProIPR005722; ATPase_F1-cplx_bsu; .
InterProIPR018118; ATPase_F1/A1-cplx_a/bsu_N; .
InterProIPR000793; ATPase_F1/V1/A1-cplx_a/bsu_C; .
InterProIPR004100; ATPase_F1/V1/A1-cplx_a/bsu_N; .
InterProIPR000194; ATPase_F1/V1/A1_a/bsu_nucl-bd; .
InterProIPR024034; ATPase_F1_bsu/V1_C; .
Gene3DG3DSA:1.10.1140.10; G3DSA:1.10.1140.10; 1; .
KOK02133; -; .
PANTHERPTHR15184:SF8; ATPase_F1_b; 1; .
PfamPF00006; ATP-synt_ab; 1; .
PfamPF00306; ATP-synt_ab_C; 1; .
PfamPF02874; ATP-synt_ab_N; 1; .
SMARTSM00382; AAA; 1; .
SUPFAMSSF47917; ATPase_a/b_C; 1; .
SUPFAMSSF50615; ATPase_a/b_N; 1; .
TIGRFAMsTIGR01039; AtpD; 1; .
PROSITEPS00152; ATPASE_ALPHA_BETA; 1; .





Searching in 'World-2DPAGE Repository [0022]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0022):  ATPB_RAT

ATPB_RAT


General information about the entry
View entry in simple text format
Entry nameATPB_RAT
Primary accession numberP10719
integrated into World-2DPAGE Repository (0022) on May 7, 2010 (release 1)
2D Annotations were last modified onJune 22, 2011 (version 2)
General Annotations were last modified on November 24, 2011 (version 2)
Name and origin of the protein
DescriptionRecName: Full=ATP synthase subunit beta, mitochondrial; EC=3.6.3.14; Flags: Precursor;.
Gene nameName=Atp5b
Annotated speciesRattus [TaxID: 10114]
TaxonomyEukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae.
References
[1]   2D-PAGE GEL CHARACTERIZATION
DOI=10.1002/pmic.201000593;
Burniston J.G., Kenyani J., Wastling J.M., Burant C.F., Qi N.R., Koch L.G., Britton S.L.
''Proteomic analysis reveals perturbed energy metabolism and elevated oxidative stress in hearts of rats with inborn low aerobic capacity''
Proteomics 11(16):3369-3379 (2011)
2D PAGE maps for identified proteins
How to interpret a protein

HCR_LCR_HEART {HCR LCR Cardiac Map}
Rattus
Tissue: Heart
HCR_LCR_HEART
  map experimental info 		 
HCR_LCR_HEART

MAP LOCATIONS:
pI=5.19; Mw=56318  [identification data]
pI=5.19; Mw=56318  [identification data]
pI=5.19; Mw=56318  [identification data]
pI=5.19; Mw=56318  [identification data]

IDENTIFICATION: SPOT 331: SeqCov=41.8%. Peptides MS=17/20. Mascot PMF Score=196 [1]
SPOT 507: SeqCov=40.1%. Peptides MS=17/20. Mascot PMF Score=184 [1]; SPOT 795: SeqCov=28%. Peptides MS=12/20. Mascot PMF Score=102 [1]; SPOT 875: SeqCov=23.8%. Peptides MS=13/20. Mascot PMF Score=82 [1].
PEPTIDE EVIDENCE: SPOT 795: 226-AHGGYSVFAGVGER-239 (89) / 282-VALTGLTVAEYFR-294 (52) / 295-DQEGQDVLLFIDNIFR-310 (29) [1]
SPOT 875: 226-AHGGYSVFAGVGER-239 (101) / 265-VALVYGQMNEPPGAR-279 (71) / 265-VALVYGQMNEPPGAR-279 Oxidation (M) (22) [1].
MAPPING (identification):
SPOT 331: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1];
SPOT 507: Peptide mass fingerprinting [1];
SPOT 795: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1];
SPOT 875: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1].

Copyright
Data from Dr. Jatin Burniston, Liverpool John Moores University, UK
Cross-references
UniProtKB/Swiss-ProtP10719; ATPB_RAT.



2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_11
Entry nameATPB_RAT
Primary accession numberP10719
Secondary accession number(s) Q499W0
Sequence was last modified on April 1, 1990 (version 2)
Annotations were last modified on November 16, 2011 (version 124)
Name and origin of the protein
DescriptionRecName: Full=ATP synthase subunit beta, mitochondrial; EC=3.6.3.14; Flags: Precursor;
Gene nameName=Atp5b
Encoded onName=Atp5b
Keywords3D-structure; Acetylation; ATP synthesis; ATP-binding; CF(1); Complete proteome; Direct protein sequencing; Hydrogen ion transport; Hydrolase; Ion transport; Membrane; Mitochondrion; Mitochondrion inner membrane; Nucleotide-binding; Phosphoprotein; Reference proteome; Transit peptide; Transport.
Copyright
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBLBC099743; AAH99743.1; -; mRNA
EMBLM25301; AAA57154.1; -; mRNA
EMBLM19044; AAB02288.1; ALT_SEQ; mRNA
EMBLM57634; AAA40778.1; -; mRNA
IPIIPI00551812; -; .
PIRA28701; A28701; .
PIRA30160; A30160; .
RefSeqNP_599191.1; NM_134364.1; .
UniGeneRn.92965; -; .
PDB1MAB; X-ray; 2.80 A; B=51-529
PDB2F43; X-ray; 3.00 A; B=51-529
PDBsum1MAB; -; .
PDBsum2F43; -; .
ProteinModelPortalP10719; -; .
SMRP10719; 51-527; .
IntActP10719; 3; .
MINTMINT-4587159; -; .
STRINGP10719; -; .
PhosphoSiteP10719; -; .
UCD-2DPAGEP10719; -; .
World-2DPAGE0004:P10719; -; .
PRIDEP10719; -; .
GeneID171374; -; .
KEGGrno:171374; -; .
UCSCNM_134364; rat; .
CTD506; -; .
RGD621368; Atp5b; .
eggNOGroNOG07745; -; .
HOVERGENHBG004307; -; .
InParanoidP10719; -; .
OrthoDBEOG4ZCT4C; -; .
PhylomeDBP10719; -; .
NextBio622183; -; .
ArrayExpressP10719; -; .
GenevestigatorP10719; -; .
GermOnlineENSRNOG00000002840; Rattus norvegicus; .
GOGO:0000275; C:mitochondrial proton-transporting ATP synthase complex; catalytic core F(1); IDA:RGD
GOGO:0005524; F:ATP binding; IDA:RGD; .
GOGO:0005509; F:calcium ion binding; IDA:RGD; .
GOGO:0046933; F:hydrogen ion transporting ATP synthase activity; rotational mechanism; IEA:InterPro
GOGO:0008553; F:hydrogen-exporting ATPase activity; phosphorylative mechanism; IEA:InterPro
GOGO:0030228; F:lipoprotein particle receptor activity; IDA:RGD; .
GOGO:0006172; P:ADP biosynthetic process; IDA:RGD; .
GOGO:0015991; P:ATP hydrolysis coupled proton transport; IEA:InterPro; .
GOGO:0015986; P:ATP synthesis coupled proton transport; IEA:InterPro; .
InterProIPR020003; ATPase_a/bsu_AS; .
InterProIPR003593; ATPase_AAA+_core; .
InterProIPR005722; ATPase_F1-cplx_bsu; .
InterProIPR018118; ATPase_F1/A1-cplx_a/bsu_N; .
InterProIPR000793; ATPase_F1/V1/A1-cplx_a/bsu_C; .
InterProIPR004100; ATPase_F1/V1/A1-cplx_a/bsu_N; .
InterProIPR000194; ATPase_F1/V1/A1_a/bsu_nucl-bd; .
InterProIPR024034; ATPase_F1_bsu/V1_C; .
Gene3DG3DSA:1.10.1140.10; G3DSA:1.10.1140.10; 1; .
KOK02133; -; .
PANTHERPTHR15184:SF8; ATPase_F1_b; 1; .
PfamPF00006; ATP-synt_ab; 1; .
PfamPF00306; ATP-synt_ab_C; 1; .
PfamPF02874; ATP-synt_ab_N; 1; .
SMARTSM00382; AAA; 1; .
SUPFAMSSF47917; ATPase_a/b_C; 1; .
SUPFAMSSF50615; ATPase_a/b_N; 1; .
TIGRFAMsTIGR01039; AtpD; 1; .
PROSITEPS00152; ATPASE_ALPHA_BETA; 1; .





Searching in 'World-2DPAGE Repository [0030]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0030):  ATPB_RAT

ATPB_RAT


General information about the entry
View entry in simple text format
Entry nameATPB_RAT
Primary accession numberP10719
integrated into World-2DPAGE Repository (0030) on November 9, 2010 (release 1)
2D Annotations were last modified onJune 21, 2011 (version 2)
General Annotations were last modified on November 23, 2011 (version 2)
Name and origin of the protein
DescriptionRecName: Full=ATP synthase subunit beta, mitochondrial; EC=3.6.3.14; Flags: Precursor;.
Gene nameName=Atp5b
Annotated speciesRattus norvegicus (Rat) [TaxID: 10116]
TaxonomyEukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
References
[1]   2D-PAGE GEL CHARACTERIZATION
DOI=10.1002/pmic.201000006;
D'Hertog W., Maris M., Thorrez L., Waelkens E., Overbergh L., Mathieu C.
''Two-dimensional gel proteome reference map of INS-1E cells''
Proteomics 11(7):1365-1369 (2011)
2D PAGE maps for identified proteins
How to interpret a protein

RAT_INS1E_4-7 {INS-1E cell line, a model rat cell line for pancreatic beta cells, PH4-7}
Rattus norvegicus (Rat)
RAT_INS1E_4-7
  map experimental info 		 
RAT_INS1E_4-7

MAP LOCATIONS:
pI=4.68; Mw=65166  [identification data]
pI=4.88; Mw=63916  [identification data]
pI=4.59; Mw=62864  [identification data]
pI=4.87; Mw=61915  [identification data]
pI=4.82; Mw=61915  [identification data]
pI=4.95; Mw=61573  [identification data]
pI=4.87; Mw=60559  [identification data]
pI=4.77; Mw=58907  [identification data]

IDENTIFICATION: SPOT 914: Mascot protein score=378. Number of peptides=7 [1]
SPOT 964: Mascot protein score=149. Number of peptides=8 [1]; SPOT 995: Mascot protein score=258. Number of peptides=7 [1]; SPOT 1027: Mascot protein score=47. Number of peptides=1 [1]; SPOT 1030: Mascot protein score=98. Number of peptides=2 [1]; SPOT 1037: Mascot protein score=353. Number of peptides=8 [1]; SPOT 1069: Mascot protein score=392. Number of peptides=10 [1]; SPOT 1119: Mascot protein score=98. Number of peptides=3 [1].
MAPPING (identification):
SPOT 914: Tandem mass spectrometry [1];
SPOT 964: Tandem mass spectrometry [1];
SPOT 995: Tandem mass spectrometry [1];
SPOT 1027: Tandem mass spectrometry [1];
SPOT 1030: Tandem mass spectrometry [1];
SPOT 1037: Tandem mass spectrometry [1];
SPOT 1069: Tandem mass spectrometry [1];
SPOT 1119: Tandem mass spectrometry [1].

Copyright
Data from Dr. Wannes D'Hertog, Catholic University Leuven, Belgium
Cross-references
UCD-2DPAGEP10719; ATPB_RAT.
UniProtKB/Swiss-ProtP10719; ATPB_RAT.
World-2DPAGE RepositoryP10719; ATPB_RAT.



2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_11
Entry nameATPB_RAT
Primary accession numberP10719
Secondary accession number(s) Q499W0
Sequence was last modified on April 1, 1990 (version 2)
Annotations were last modified on November 16, 2011 (version 124)
Name and origin of the protein
DescriptionRecName: Full=ATP synthase subunit beta, mitochondrial; EC=3.6.3.14; Flags: Precursor;
Gene nameName=Atp5b
Encoded onName=Atp5b
Keywords3D-structure; Acetylation; ATP synthesis; ATP-binding; CF(1); Complete proteome; Direct protein sequencing; Hydrogen ion transport; Hydrolase; Ion transport; Membrane; Mitochondrion; Mitochondrion inner membrane; Nucleotide-binding; Phosphoprotein; Reference proteome; Transit peptide; Transport.
Copyright
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBLBC099743; AAH99743.1; -; mRNA
EMBLM25301; AAA57154.1; -; mRNA
EMBLM19044; AAB02288.1; ALT_SEQ; mRNA
EMBLM57634; AAA40778.1; -; mRNA
IPIIPI00551812; -; .
PIRA28701; A28701; .
PIRA30160; A30160; .
RefSeqNP_599191.1; NM_134364.1; .
UniGeneRn.92965; -; .
PDB1MAB; X-ray; 2.80 A; B=51-529
PDB2F43; X-ray; 3.00 A; B=51-529
PDBsum1MAB; -; .
PDBsum2F43; -; .
ProteinModelPortalP10719; -; .
SMRP10719; 51-527; .
IntActP10719; 3; .
MINTMINT-4587159; -; .
STRINGP10719; -; .
PhosphoSiteP10719; -; .
UCD-2DPAGEP10719; -; .
World-2DPAGE0004:P10719; -; .
PRIDEP10719; -; .
GeneID171374; -; .
KEGGrno:171374; -; .
UCSCNM_134364; rat; .
CTD506; -; .
RGD621368; Atp5b; .
eggNOGroNOG07745; -; .
HOVERGENHBG004307; -; .
InParanoidP10719; -; .
OrthoDBEOG4ZCT4C; -; .
PhylomeDBP10719; -; .
NextBio622183; -; .
ArrayExpressP10719; -; .
GenevestigatorP10719; -; .
GermOnlineENSRNOG00000002840; Rattus norvegicus; .
GOGO:0000275; C:mitochondrial proton-transporting ATP synthase complex; catalytic core F(1); IDA:RGD
GOGO:0005524; F:ATP binding; IDA:RGD; .
GOGO:0005509; F:calcium ion binding; IDA:RGD; .
GOGO:0046933; F:hydrogen ion transporting ATP synthase activity; rotational mechanism; IEA:InterPro
GOGO:0008553; F:hydrogen-exporting ATPase activity; phosphorylative mechanism; IEA:InterPro
GOGO:0030228; F:lipoprotein particle receptor activity; IDA:RGD; .
GOGO:0006172; P:ADP biosynthetic process; IDA:RGD; .
GOGO:0015991; P:ATP hydrolysis coupled proton transport; IEA:InterPro; .
GOGO:0015986; P:ATP synthesis coupled proton transport; IEA:InterPro; .
InterProIPR020003; ATPase_a/bsu_AS; .
InterProIPR003593; ATPase_AAA+_core; .
InterProIPR005722; ATPase_F1-cplx_bsu; .
InterProIPR018118; ATPase_F1/A1-cplx_a/bsu_N; .
InterProIPR000793; ATPase_F1/V1/A1-cplx_a/bsu_C; .
InterProIPR004100; ATPase_F1/V1/A1-cplx_a/bsu_N; .
InterProIPR000194; ATPase_F1/V1/A1_a/bsu_nucl-bd; .
InterProIPR024034; ATPase_F1_bsu/V1_C; .
Gene3DG3DSA:1.10.1140.10; G3DSA:1.10.1140.10; 1; .
KOK02133; -; .
PANTHERPTHR15184:SF8; ATPase_F1_b; 1; .
PfamPF00006; ATP-synt_ab; 1; .
PfamPF00306; ATP-synt_ab_C; 1; .
PfamPF02874; ATP-synt_ab_N; 1; .
SMARTSM00382; AAA; 1; .
SUPFAMSSF47917; ATPase_a/b_C; 1; .
SUPFAMSSF50615; ATPase_a/b_N; 1; .
TIGRFAMsTIGR01039; AtpD; 1; .
PROSITEPS00152; ATPASE_ALPHA_BETA; 1; .





Searching in 'World-2DPAGE Repository [0069]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0069):  ATPB_RAT

ATPB_RAT


General information about the entry
View entry in simple text format
Entry nameATPB_RAT
Primary accession numberATPB_RAT
integrated into World-2DPAGE Repository (0069) on February 27, 2014 (release 1)
2D Annotations were last modified onFebruary 27, 2014 (version 1)
General Annotations were last modified on February 27, 2014 (version 1)
Name and origin of the protein
DescriptionATPB_RAT.
Annotated speciesRattus [TaxID: 10114]
TaxonomyEukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae.
References
[1]   2D GEL CHARACTERIZATION
DOI=10.1016/j.jprot.2014.04.015;
Burniston J.G., Kenyani J., Gray D., Guadagnin E., Jarman I.H., Cobley J.N., Cuthbertson D.J., Chen Y.-W., Wastling J.M., Lisboa P., Koch L.G., Britton S.L.
''Conditional independence mapping of DIGE data reveals PDIA3 protein species as key nodes associated with muscle aerobic capacity''
Journal of Proteomics 106(1):230-245 (2014)
2D PAGE maps for identified proteins
How to interpret a protein

RATTUS_SOLEUS-DIGE_4.5-9.5 {M+F HCR LCR Soleus DiGE Exp}
Rattus
Tissue: Skeletal muscle
RATTUS_SOLEUS-DIGE_4.5-9.5
  map experimental info 		 
RATTUS_SOLEUS-DIGE_4.5-9.5

MAP LOCATIONS:
pI=5.10; Mw=56318
pI=5.10; Mw=56318
pI=5.10; Mw=56318
pI=5.10; Mw=56318
pI=5.10; Mw=56318

% COVERAGE: SPOT 345: 61 [1]
SPOT 347: 71 [1]; SPOT 348: 41 [1]; SPOT 350: 70 [1]; SPOT 753: 70 [1].
MOWSE: SPOT 345: 1672 [1]
SPOT 347: 2018 [1]; SPOT 348: 1332 [1]; SPOT 350: 1897 [1]; SPOT 753: 1733 [1].
NAME: SPOT 345: ATP synthase subunit beta, mitochondrial OS=Rattus norvegicu [1]
SPOT 347: ATP synthase subunit beta, mitochondrial OS=Rattus norvegicu [1]; SPOT 348: ATP synthase subunit beta, mitochondrial OS=Rattus norvegicu [1]; SPOT 350: ATP synthase subunit beta, mitochondrial OS=Rattus norvegicu [1]; SPOT 753: ATP synthase subunit beta, mitochondrial OS=Rattus norvegicu [1].
Copyright
Data from Dr. Jatin G. Burniston, Research Institute for Sport and Exercise Sciences, Liverpool John Moores University, UK





Searching in 'World-2DPAGE Repository [0001]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0001):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0001)



Searching in 'World-2DPAGE Repository [0002]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0002):  ATPB_RAT

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Searching in 'World-2DPAGE Repository [0003]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0003):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0003)



Searching in 'World-2DPAGE Repository [0005]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0005):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0005)



Searching in 'World-2DPAGE Repository [0006]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0006):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0006)



Searching in 'World-2DPAGE Repository [0007]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0007):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0007)



Searching in 'World-2DPAGE Repository [0008]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0008):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0008)



Searching in 'World-2DPAGE Repository [0009]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0009):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0009)



Searching in 'World-2DPAGE Repository [0010]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0010):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0010)



Searching in 'World-2DPAGE Repository [0011]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0011):  ATPB_RAT

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Searching in 'World-2DPAGE Repository [0012]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0012):  ATPB_RAT

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Searching in 'World-2DPAGE Repository [0014]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0014):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0014)



Searching in 'World-2DPAGE Repository [0017]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0017):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0017)



Searching in 'World-2DPAGE Repository [0018]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0018):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0018)



Searching in 'World-2DPAGE Repository [0020]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0020):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0020)



Searching in 'World-2DPAGE Repository [0021]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0021):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0021)



Searching in 'World-2DPAGE Repository [0023]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0023):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0023)



Searching in 'World-2DPAGE Repository [0024]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0024):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0024)



Searching in 'World-2DPAGE Repository [0026]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0026):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0026)



Searching in 'World-2DPAGE Repository [0027]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0027):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0027)



Searching in 'World-2DPAGE Repository [0029]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0029):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0029)



Searching in 'World-2DPAGE Repository [0031]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0031):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0031)



Searching in 'World-2DPAGE Repository [0032]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0032):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0032)



Searching in 'World-2DPAGE Repository [0034]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0034):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0034)



Searching in 'World-2DPAGE Repository [0035]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0035):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0035)



Searching in 'World-2DPAGE Repository [0036]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0036):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0036)



Searching in 'World-2DPAGE Repository [0037]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0037):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0037)



Searching in 'World-2DPAGE Repository [0038]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0038):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0038)



Searching in 'World-2DPAGE Repository [0039]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0039):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0039)



Searching in 'World-2DPAGE Repository [0040]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0040):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0040)



Searching in 'World-2DPAGE Repository [0042]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0042):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0042)



Searching in 'World-2DPAGE Repository [0043]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0043):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0043)



Searching in 'World-2DPAGE Repository [0044]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0044):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0044)



Searching in 'World-2DPAGE Repository [0046]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0046):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0046)



Searching in 'World-2DPAGE Repository [0047]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0047):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0047)



Searching in 'World-2DPAGE Repository [0050]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0050):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0050)



Searching in 'World-2DPAGE Repository [0051]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0051):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0051)



Searching in 'World-2DPAGE Repository [0053]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0053):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0053)



Searching in 'World-2DPAGE Repository [0054]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0054):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0054)



Searching in 'World-2DPAGE Repository [0056]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0056):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0056)



Searching in 'World-2DPAGE Repository [0059]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0059):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0059)



Searching in 'World-2DPAGE Repository [0061]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0061):  ATPB_RAT

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Searching in 'World-2DPAGE Repository [0062]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0062):  ATPB_RAT

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Searching in 'World-2DPAGE Repository [0063]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0063):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0063)



Searching in 'World-2DPAGE Repository [0066]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0066):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0066)



Searching in 'World-2DPAGE Repository [0068]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0068):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0068)



Searching in 'World-2DPAGE Repository [0076]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0076):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0076)



Searching in 'World-2DPAGE Repository [0077]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0077):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0077)



Searching in 'World-2DPAGE Repository [0080]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0080):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0080)



Searching in 'World-2DPAGE Repository [0084]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0084):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0084)



Searching in 'World-2DPAGE Repository [0085]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0085):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0085)



Searching in 'World-2DPAGE Repository [0088]' for entry matching: ATPB_RAT




World-2DPAGE Repository (0088):  ATPB_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0088)



World-2DPAGE Repository image

World-2DPAGE Repository (search AC)

Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the Expasy web server