resource logo

World-2DPAGE Repository

Attention: World-2DPAGE is no longer maintained.

World-2DPAGE Repository no longer accepts submissions.

World-2DPAGE Repository 
Search by  [accession number] *
[description, ID or gene] 
[author names] 
[spot ID / serial number] 
[identification methods] 
[pI / Mw range] 
[combined fields] 

Maps  [experimental info] 
[protein list] 
[graphical interface]


use 'Ctrl' to select several

Select Remote Interfaces
[All Interfaces]
World-2DPAGE Portal

Exclude local DBs
has only effect if a remote
interface is selected
Searching in 'World-2DPAGE Repository [0022]' for entry matching: ATPB_RAT

World-2DPAGE Repository (0022):  ATPB_RAT


General information about the entry
View entry in simple text format
Entry nameATPB_RAT
Primary accession numberP10719
integrated into World-2DPAGE Repository (0022) on May 7, 2010 (release 1)
2D Annotations were last modified onJune 22, 2011 (version 2)
General Annotations were last modified on November 24, 2011 (version 2)
Name and origin of the protein
DescriptionRecName: Full=ATP synthase subunit beta, mitochondrial; EC=; Flags: Precursor;.
Gene nameName=Atp5b
Annotated speciesRattus [TaxID: 10114]
TaxonomyEukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae.
Burniston J.G., Kenyani J., Wastling J.M., Burant C.F., Qi N.R., Koch L.G., Britton S.L.
''Proteomic analysis reveals perturbed energy metabolism and elevated oxidative stress in hearts of rats with inborn low aerobic capacity''
Proteomics 11(16):3369-3379 (2011)
2D PAGE maps for identified proteins
How to interpret a protein

Tissue: Heart
  map experimental info

pI=5.19; Mw=56318  [identification data]
pI=5.19; Mw=56318  [identification data]
pI=5.19; Mw=56318  [identification data]
pI=5.19; Mw=56318  [identification data]

IDENTIFICATION: SPOT 331: SeqCov=41.8%. Peptides MS=17/20. Mascot PMF Score=196 [1]
SPOT 507: SeqCov=40.1%. Peptides MS=17/20. Mascot PMF Score=184 [1]; SPOT 795: SeqCov=28%. Peptides MS=12/20. Mascot PMF Score=102 [1]; SPOT 875: SeqCov=23.8%. Peptides MS=13/20. Mascot PMF Score=82 [1].
SPOT 875: 226-AHGGYSVFAGVGER-239 (101) / 265-VALVYGQMNEPPGAR-279 (71) / 265-VALVYGQMNEPPGAR-279 Oxidation (M) (22) [1].
MAPPING (identification):
SPOT 331: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1];
SPOT 507: Peptide mass fingerprinting [1];
SPOT 795: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1];
SPOT 875: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1].

Data from Dr. Jatin Burniston, Liverpool John Moores University, UK
UniProtKB/Swiss-ProtP10719; ATPB_RAT.

2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.

External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_11
Entry nameATPB_RAT
Primary accession numberP10719
Secondary accession number(s) Q499W0
Sequence was last modified on April 1, 1990 (version 2)
Annotations were last modified on November 16, 2011 (version 124)
Name and origin of the protein
DescriptionRecName: Full=ATP synthase subunit beta, mitochondrial; EC=; Flags: Precursor;
Gene nameName=Atp5b
Encoded onName=Atp5b
Keywords3D-structure; Acetylation; ATP synthesis; ATP-binding; CF(1); Complete proteome; Direct protein sequencing; Hydrogen ion transport; Hydrolase; Ion transport; Membrane; Mitochondrion; Mitochondrion inner membrane; Nucleotide-binding; Phosphoprotein; Reference proteome; Transit peptide; Transport.
Copyrighted by the UniProt Consortium, see Distributed under the Creative Commons Attribution-NoDerivs License
EMBLBC099743; AAH99743.1; -; mRNA
EMBLM25301; AAA57154.1; -; mRNA
EMBLM19044; AAB02288.1; ALT_SEQ; mRNA
EMBLM57634; AAA40778.1; -; mRNA
IPIIPI00551812; -; .
PIRA28701; A28701; .
PIRA30160; A30160; .
RefSeqNP_599191.1; NM_134364.1; .
UniGeneRn.92965; -; .
PDB1MAB; X-ray; 2.80 A; B=51-529
PDB2F43; X-ray; 3.00 A; B=51-529
PDBsum1MAB; -; .
PDBsum2F43; -; .
ProteinModelPortalP10719; -; .
SMRP10719; 51-527; .
IntActP10719; 3; .
MINTMINT-4587159; -; .
STRINGP10719; -; .
PhosphoSiteP10719; -; .
UCD-2DPAGEP10719; -; .
World-2DPAGE0004:P10719; -; .
PRIDEP10719; -; .
GeneID171374; -; .
KEGGrno:171374; -; .
UCSCNM_134364; rat; .
CTD506; -; .
RGD621368; Atp5b; .
eggNOGroNOG07745; -; .
HOVERGENHBG004307; -; .
InParanoidP10719; -; .
OrthoDBEOG4ZCT4C; -; .
PhylomeDBP10719; -; .
NextBio622183; -; .
ArrayExpressP10719; -; .
GenevestigatorP10719; -; .
GermOnlineENSRNOG00000002840; Rattus norvegicus; .
GOGO:0000275; C:mitochondrial proton-transporting ATP synthase complex; catalytic core F(1); IDA:RGD
GOGO:0005524; F:ATP binding; IDA:RGD; .
GOGO:0005509; F:calcium ion binding; IDA:RGD; .
GOGO:0046933; F:hydrogen ion transporting ATP synthase activity; rotational mechanism; IEA:InterPro
GOGO:0008553; F:hydrogen-exporting ATPase activity; phosphorylative mechanism; IEA:InterPro
GOGO:0030228; F:lipoprotein particle receptor activity; IDA:RGD; .
GOGO:0006172; P:ADP biosynthetic process; IDA:RGD; .
GOGO:0015991; P:ATP hydrolysis coupled proton transport; IEA:InterPro; .
GOGO:0015986; P:ATP synthesis coupled proton transport; IEA:InterPro; .
InterProIPR020003; ATPase_a/bsu_AS; .
InterProIPR003593; ATPase_AAA+_core; .
InterProIPR005722; ATPase_F1-cplx_bsu; .
InterProIPR018118; ATPase_F1/A1-cplx_a/bsu_N; .
InterProIPR000793; ATPase_F1/V1/A1-cplx_a/bsu_C; .
InterProIPR004100; ATPase_F1/V1/A1-cplx_a/bsu_N; .
InterProIPR000194; ATPase_F1/V1/A1_a/bsu_nucl-bd; .
InterProIPR024034; ATPase_F1_bsu/V1_C; .
Gene3DG3DSA:1.10.1140.10; G3DSA:1.10.1140.10; 1; .
KOK02133; -; .
PANTHERPTHR15184:SF8; ATPase_F1_b; 1; .
PfamPF00006; ATP-synt_ab; 1; .
PfamPF00306; ATP-synt_ab_C; 1; .
PfamPF02874; ATP-synt_ab_N; 1; .
SMARTSM00382; AAA; 1; .
SUPFAMSSF47917; ATPase_a/b_C; 1; .
SUPFAMSSF50615; ATPase_a/b_N; 1; .
TIGRFAMsTIGR01039; AtpD; 1; .

World-2DPAGE Repository image

World-2DPAGE Repository (search AC)

Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the Expasy web server