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Searching in 'World-2DPAGE Repository [0019]' for entry matching: CH60_RAT




World-2DPAGE Repository (0019):  CH60_RAT

CH60_RAT


General information about the entry
View entry in simple text format
Entry nameCH60_RAT
Primary accession numberP63039
integrated into World-2DPAGE Repository (0019) on December 9, 2009 (release 1)
2D Annotations were last modified onMay 30, 2011 (version 2)
General Annotations were last modified on January 13, 2012 (version 2)
Name and origin of the protein
DescriptionRecName: Full=60 kDa heat shock protein, mitochondrial; AltName: Full=60 kDa chaperonin; AltName: Full=Chaperonin 60; Short=CPN60; AltName: Full=HSP-65; AltName: Full=Heat shock protein 60; Short=HSP-60; Short=Hsp60; AltName: Full=Mitochondrial matrix protein P1; Flags: Precursor;.
Gene nameName=Hspd1
Synonyms=Hsp60
Annotated speciesRattus norvegicus (Rat) [TaxID: 10116]
TaxonomyEukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
References
[1]   2D-PAGE GEL CHARACTERIZATION
DOI=10.1111/j.1471-4159.2010.06719.x;
VanGuilder H.D., Yan H., Farley J.A., Sonntag W.E., Freeman W.M.
''Aging alters the expression of neurotransmission-regulating proteins in the hippocampal synaptoproteome''
J of Neurochemistry 113(6):1577-1588 (2010)
2D PAGE maps for identified proteins
How to interpret a protein

HIPP_SYNAP {Rat hippocampal synaptoproteome}
Rattus norvegicus (Rat)
Tissue: Hippocampus
HIPP_SYNAP
  map experimental info 		 
HIPP_SYNAP

MAP LOCATIONS:
pI=5.91; Mw=61098  [identification data]
pI=5.91; Mw=61098  [identification data]
pI=5.91; Mw=61098  [identification data]
pI=5.91; Mw=61098  [identification data]
pI=5.91; Mw=61098  [identification data]

IDENTIFICATION: SPOT 381: Peptides number=9. SeqCov=25%. MOWSE score=2.00E+13 [1]
SPOT 383: Peptides number=9. SeqCov=18%. MOWSE score=2.02E+9 [1]; SPOT 386: Peptides number=12. SeqCov=18%. MOWSE score=2.27E+5 [1]; SPOT 387: Peptides number=11. SeqCov=23.2%. MOWSE score=2.83E+11 [1]; SPOT 645: Peptides number=3. SeqCov=7.5%. MOWSE score=4.38E+3 [1].
MAPPING (identification):
SPOT 381: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1];
SPOT 383: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1];
SPOT 386: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1];
SPOT 387: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1];
SPOT 645: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1].

Copyright
Data from Dr. Willard Freeman, Penn State College of Medicine, USA
Cross-references
UniProtKB/Swiss-ProtP63039; CH60_RAT.



2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_12
Entry nameCH60_RAT
Primary accession numberP63039
Secondary accession number(s) P19226 P19227 P97602
Sequence was last modified on August 31, 2004 (version 1)
Annotations were last modified on November 16, 2011 (version 74)
Name and origin of the protein
DescriptionRecName: Full=60 kDa heat shock protein, mitochondrial; AltName: Full=60 kDa chaperonin; AltName: Full=Chaperonin 60; Short=CPN60; AltName: Full=HSP-65; AltName: Full=Heat shock protein 60; Short=HSP-60; Short=Hsp60; AltName: Full=Mitochondrial matrix protein P1; Flags: Precursor;
Gene nameName=Hspd1
Synonyms=Hsp60
Encoded onName=Hspd1; Synonyms=Hsp60
KeywordsAcetylation; ATP-binding; Chaperone; Complete proteome; Direct protein sequencing; Mitochondrion; Nucleotide-binding; Phosphoprotein; Reference proteome; Transit peptide.
Copyright
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBLX54793; CAA38564.1; -; mRNA
EMBLU68562; AAC53362.1; -; Genomic_DNA
EMBLBC086507; AAH86507.1; -; mRNA
EMBLX53585; CAA37654.1; -; mRNA
IPIIPI00339148; -; .
PIRS13089; HHRT60; .
RefSeqNP_071565.2; NM_022229.2; .
UniGeneRn.102058; -; .
ProteinModelPortalP63039; -; .
SMRP63039; 27-554; .
IntActP63039; 2; .
MINTMINT-1860257; -; .
STRINGP63039; -; .
PhosphoSiteP63039; -; .
World-2DPAGE0004:P63039; -; .
PRIDEP63039; -; .
EnsemblENSRNOT00000019912; ENSRNOP00000019912; ENSRNOG00000014525; .
GeneID63868; -; .
KEGGrno:63868; -; .
UCSCNM_022229; rat; .
CTD3329; -; .
RGD621314; Hspd1; .
eggNOGroNOG14286; -; .
GeneTreeENSGT00390000005727; -; .
HOVERGENHBG001982; -; .
InParanoidP63039; -; .
OrthoDBEOG4PK27J; -; .
PhylomeDBP63039; -; .
NextBio612488; -; .
GenevestigatorP63039; -; .
GermOnlineENSRNOG00000014525; Rattus norvegicus; .
GOGO:0009986; C:cell surface; IDA:RGD; .
GOGO:0005829; C:cytosol; IDA:RGD; .
GOGO:0005794; C:Golgi apparatus; IDA:RGD; .
GOGO:0045121; C:membrane raft; IDA:RGD; .
GOGO:0030061; C:mitochondrial crista; IDA:RGD; .
GOGO:0005759; C:mitochondrial matrix; IEA:UniProtKB-SubCell; .
GOGO:0005791; C:rough endoplasmic reticulum; IDA:RGD; .
GOGO:0042588; C:zymogen granule; IDA:RGD; .
GOGO:0005524; F:ATP binding; IEA:UniProtKB-KW; .
GOGO:0043559; F:insulin binding; IPI:RGD; .
GOGO:0051787; F:misfolded protein binding; IPI:RGD; .
GOGO:0002020; F:protease binding; IPI:RGD; .
GOGO:0046982; F:protein heterodimerization activity; IPI:RGD; .
GOGO:0006916; P:anti-apoptosis; IMP:RGD; .
GOGO:0051085; P:chaperone mediated protein folding requiring cofactor; IDA:RGD; .
GOGO:0002236; P:detection of misfolded protein; IDA:RGD; .
GOGO:0045768; P:positive regulation of anti-apoptosis; IMP:RGD; .
GOGO:0050729; P:positive regulation of inflammatory response; IDA:RGD; .
GOGO:0042026; P:protein refolding; IEA:InterPro; .
GOGO:0033198; P:response to ATP; IEP:RGD; .
GOGO:0042220; P:response to cocaine; IEP:RGD; .
GOGO:0042493; P:response to drug; IEP:RGD; .
GOGO:0043627; P:response to estrogen stimulus; IEP:RGD; .
GOGO:0009408; P:response to heat; IEP:RGD; .
GOGO:0042542; P:response to hydrogen peroxide; IEP:RGD; .
GOGO:0001666; P:response to hypoxia; IEP:RGD; .
GOGO:0032496; P:response to lipopolysaccharide; IEP:RGD; .
InterProIPR018370; Chaperonin_Cpn60_CS; .
InterProIPR001844; Chaprnin_Cpn60; .
InterProIPR002423; Cpn60/TCP-1; .
KOK04077; -; .
PANTHERPTHR11353; Cpn60/TCP-1; 1; .
PfamPF00118; Cpn60_TCP1; 1; .
PRINTSPR00298; CHAPERONIN60; .
SUPFAMSSF48592; GroEL-ATPase; 1; .
TIGRFAMsTIGR02348; GroEL; 1; .
PROSITEPS00296; CHAPERONINS_CPN60; 1; .


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Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the ExPASy web server