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Searching in 'World-2DPAGE Repository [0030]' for entry matching: CSDE1_RAT

World-2DPAGE Repository (0030):  CSDE1_RAT


General information about the entry
View entry in simple text format
Entry nameCSDE1_RAT
Primary accession numberP18395
integrated into World-2DPAGE Repository (0030) on November 9, 2010 (release 1)
2D Annotations were last modified onJune 21, 2011 (version 2)
General Annotations were last modified on November 23, 2011 (version 2)
Name and origin of the protein
DescriptionRecName: Full=Cold shock domain-containing protein E1; AltName: Full=Protein UNR;.
Gene nameName=Csde1
Annotated speciesRattus norvegicus (Rat) [TaxID: 10116]
TaxonomyEukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
D'Hertog W., Maris M., Thorrez L., Waelkens E., Overbergh L., Mathieu C.
''Two-dimensional gel proteome reference map of INS-1E cells''
Proteomics 11(7):1365-1369 (2011)
2D PAGE maps for identified proteins
How to interpret a protein

RAT_INS1E_4-7 {INS-1E cell line, a model rat cell line for pancreatic beta cells, PH4-7}
Rattus norvegicus (Rat)
  map experimental info

pI=6.26; Mw=93633  [identification data]
pI=6.11; Mw=91584  [identification data]
pI=6.26; Mw=91078  [identification data]

IDENTIFICATION: SPOT 278: Mascot protein score=84. Number of peptides=4 [1]
SPOT 316: Mascot protein score=172. Number of peptides=6 [1]; SPOT 330: Mascot protein score=238. Number of peptides=6 [1].
MAPPING (identification):
SPOT 278: Tandem mass spectrometry [1];
SPOT 316: Tandem mass spectrometry [1];
SPOT 330: Tandem mass spectrometry [1].

Data from Dr. Wannes D'Hertog, Catholic University Leuven, Belgium
UniProtKB/Swiss-ProtP18395; CSDE1_RAT.
World-2DPAGE RepositoryP18395; CSDE1_RAT.

2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.

External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_11
Entry nameCSDE1_RAT
Primary accession numberP18395
Sequence was last modified on November 1, 1990 (version 1)
Annotations were last modified on October 19, 2011 (version 95)
Name and origin of the protein
DescriptionRecName: Full=Cold shock domain-containing protein E1; AltName: Full=Protein UNR;
Gene nameName=Csde1
Encoded onName=Csde1; Synonyms=Unr
KeywordsAcetylation; Complete proteome; Cytoplasm; Phosphoprotein; Reference proteome; Repeat; RNA-binding.
Copyrighted by the UniProt Consortium, see Distributed under the Creative Commons Attribution-NoDerivs License
EMBLX52311; CAA36549.1; -; mRNA
IPIIPI00190971; -; .
PIRS11210; S11210; .
RefSeqNP_446458.1; NM_054006.1; .
UniGeneRn.3562; -; .
ProteinModelPortalP18395; -; .
SMRP18395; 16-90; 172-259; 345-424
508-582673-744; .
STRINGP18395; -; .
PhosphoSiteP18395; -; .
PRIDEP18395; -; .
GeneID117180; -; .
KEGGrno:117180; -; .
UCSCNM_054006; rat; .
CTD7812; -; .
RGD619726; Csde1; .
eggNOGroNOG14308; -; .
GeneTreeENSGT00390000016950; -; .
HOVERGENHBG013042; -; .
NextBio620034; -; .
GenevestigatorP18395; -; .
GOGO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell; .
GOGO:0003677; F:DNA binding; IEA:InterPro; .
GOGO:0003723; F:RNA binding; IEA:UniProtKB-KW; .
GOGO:0006355; P:regulation of transcription; DNA-dependent; IEA:InterPro
InterProIPR019844; Cold-shock_CS; .
InterProIPR011129; Cold_shock_prot; .
InterProIPR002059; CSP_DNA-bd; .
InterProIPR012340; NA-bd_OB-fold; .
InterProIPR016027; NA-bd_OB-fold-like; .
InterProIPR024642; SUZ-C; .
Gene3DG3DSA:; OB_NA_bd_sub; 5; .
PfamPF00313; CSD; 5; .
PfamPF12901; SUZ-C; 1; .
SMARTSM00357; CSP; 5; .
SUPFAMSSF50249; Nucleic_acid_OB; 5; .

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Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the Expasy web server