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Searching in 'World-2DPAGE Repository [0004]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0004):  DX39B_RAT


DX39B_RAT


General information about the entry
View entry in simple text format
Entry nameDX39B_RAT
Primary accession numberQ63413
integrated into World-2DPAGE Repository (0004) on October 13, 2008 (release 1)
2D Annotations were last modified onMay 18, 2011 (version 2)
General Annotations were last modified on December 22, 2011 (version 2)
Name and origin of the protein
DescriptionRecName: Full=Spliceosome RNA helicase Ddx39b; EC=3.6.4.13; AltName: Full=56 kDa U2AF65-associated protein; AltName: Full=ATP-dependent RNA helicase p47; AltName: Full=DEAD box protein Uap56;.
Gene nameName=Ddx39b
Synonyms=Bat1, Bat1a, Uap56
Annotated speciesRattus norvegicus (Rat) [TaxID: 10116]
TaxonomyEukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
References
[1]   MAPPING ON GEL
PubMed=19343716; DOI=10.1002/pmic.200800664; [NCBI, EBI, Israel, Japan]
Maurya D.K., Sundaram C.S., Bhargava P.
''Proteome profile of the mature rat olfactory bulb''
Proteomics 9(1):2593-2599 (2009)
2D PAGE maps for identified proteins
How to interpret a protein

OB21DSUB {2-DE gel for Olfactory bulb proteome}
Rattus norvegicus (Rat)
Tissue: Olfactory bulb
OB21DSUB
  map experimental info
 
OB21DSUB

MAP LOCATIONS:
pI=5.78; Mw=49000  [identification data]

MAPPING (identification):
SPOT 357: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1].

Copyright
Data from Dr. Purnima Bhargava, Centre for Cellular and Molecular Biology, India
Cross-references
UniProtKB/Swiss-ProtQ63413; DX39B_RAT.



2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_12
Entry nameDX39B_RAT
Primary accession numberQ63413
Secondary accession number(s) Q811A6 Q8R2G9
Sequence was last modified on March 15, 2005 (version 3)
Annotations were last modified on December 14, 2011 (version 87)
Name and origin of the protein
DescriptionRecName: Full=Spliceosome RNA helicase Ddx39b; EC=3.6.4.13; AltName: Full=56 kDa U2AF65-associated protein; AltName: Full=ATP-dependent RNA helicase p47; AltName: Full=DEAD box protein Uap56;
Gene nameName=Ddx39b
Synonyms=Bat1, Bat1a, Uap56
Encoded onName=Ddx39b; Synonyms=Bat1, Bat1a, Uap56
KeywordsAcetylation; ATP-binding; Complete proteome; Helicase; Hydrolase; mRNA processing; mRNA splicing; mRNA transport; Nucleotide-binding; Nucleus; Phosphoprotein; Reference proteome; RNA-binding; Spliceosome; Transport.
Copyright
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBLM75168; AAA41787.1; ALT_FRAME; mRNA
EMBLAF387339; AAL98920.1; -; Genomic_DNA
EMBLAJ314857; CAC85694.1; -; Genomic_DNA
EMBLBC080243; AAH80243.1; -; mRNA
IPIIPI00215291; -; .
PIRA42811; A42811; .
RefSeqNP_579834.2; NM_133300.3; .
UniGeneRn.202950; -; .
ProteinModelPortalQ63413; -; .
SMRQ63413; 46-426; .
STRINGQ63413; -; .
World-2DPAGE0004:Q63413; -; .
PRIDEQ63413; -; .
EnsemblENSRNOT00000001115; ENSRNOP00000001115; ENSRNOG00000000841; .
GeneID114612; -; .
KEGGrno:114612; -; .
UCSCNM_133300; rat; .
CTD7919; -; .
RGD70923; Bat1; .
eggNOGroNOG12519; -; .
GeneTreeENSGT00580000081513; -; .
HOVERGENHBG107334; -; .
InParanoidQ63413; -; .
OMAIQKDEET; -; .
OrthoDBEOG4XSKPX; -; .
PhylomeDBQ63413; -; .
NextBio618775; -; .
GenevestigatorQ63413; -; .
GermOnlineENSRNOG00000000841; Rattus norvegicus; .
GOGO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell; .
GOGO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW; .
GOGO:0005524; F:ATP binding; IEA:UniProtKB-KW; .
InterProIPR014001; DEAD-like_helicase; .
InterProIPR011545; DNA/RNA_helicase_DEAD/DEAH_N; .
InterProIPR001650; Helicase_C; .
InterProIPR014014; RNA_helicase_DEAD_Q_motif; .
KOK12812; -; .
PfamPF00270; DEAD; 1; .
PfamPF00271; Helicase_C; 1; .
SMARTSM00487; DEXDc; 1; .
SMARTSM00490; HELICc; 1; .
PROSITEPS51192; HELICASE_ATP_BIND_1; 1; .
PROSITEPS51194; HELICASE_CTER; 1; .
PROSITEPS51195; Q_MOTIF; 1; .





Searching in 'World-2DPAGE Repository [0014]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0014):  DX39B_RAT


DX39B_RAT


General information about the entry
View entry in simple text format
Entry nameDX39B_RAT
Primary accession numberQ63413
integrated into World-2DPAGE Repository (0014) on October 13, 2008 (release 1)
2D Annotations were last modified onJune 1, 2011 (version 3)
General Annotations were last modified on November 25, 2011 (version 2)
Name and origin of the protein
DescriptionRecName: Full=Spliceosome RNA helicase Ddx39b; EC=3.6.4.13; AltName: Full=56 kDa U2AF65-associated protein; AltName: Full=ATP-dependent RNA helicase p47; AltName: Full=DEAD box protein Uap56;.
Gene nameName=Ddx39b
Synonyms=Bat1, Bat1a, Uap56
Annotated speciesRattus norvegicus (Rat) [TaxID: 10116]
TaxonomyEukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
References
[1]   2D-PAGE GEL CHARACTERIZATION
DOI=10.1002/pmic.200900680;
Maurya D.K., Sundaram C.S., Bhargava P.
''Proteome profile of whole cerebellum of the mature rat''
Proteomics 10(23):4311-4319 (2010)
2D PAGE maps for identified proteins
How to interpret a protein

RAT_CEREBELLUM_21D {Proteome of 21 days old rat cerebellum}
Rattus norvegicus (Rat)
Tissue: Cerebellum
RAT_CEREBELLUM_21D
  map experimental info
 
RAT_CEREBELLUM_21D

MAP LOCATIONS:
pI=5.68; Mw=58000  [identification data]

IDENTIFICATION: SPOT 2876: SeqCov=33%. MascotPMF=88 [1].
MAPPING (identification):
SPOT 2876: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1].

Copyright
Data from Dr. Purnima Bhargava, Centre for Cellular and Molecular Biology, India
Cross-references
PRIDE10017.
UniProtKB/Swiss-ProtQ63413; DX39B_RAT.



2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_11
Entry nameDX39B_RAT
Primary accession numberQ63413
Secondary accession number(s) Q811A6 Q8R2G9
Sequence was last modified on March 15, 2005 (version 3)
Annotations were last modified on November 16, 2011 (version 86)
Name and origin of the protein
DescriptionRecName: Full=Spliceosome RNA helicase Ddx39b; EC=3.6.4.13; AltName: Full=56 kDa U2AF65-associated protein; AltName: Full=ATP-dependent RNA helicase p47; AltName: Full=DEAD box protein Uap56;
Gene nameName=Ddx39b
Synonyms=Bat1, Bat1a, Uap56
Encoded onName=Ddx39b; Synonyms=Bat1, Bat1a, Uap56
KeywordsAcetylation; ATP-binding; Complete proteome; Helicase; Hydrolase; mRNA processing; mRNA splicing; mRNA transport; Nucleotide-binding; Nucleus; Phosphoprotein; Reference proteome; RNA-binding; Spliceosome; Transport.
Copyright
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBLM75168; AAA41787.1; ALT_FRAME; mRNA
EMBLAF387339; AAL98920.1; -; Genomic_DNA
EMBLAJ314857; CAC85694.1; -; Genomic_DNA
EMBLBC080243; AAH80243.1; -; mRNA
IPIIPI00215291; -; .
PIRA42811; A42811; .
RefSeqNP_579834.2; NM_133300.3; .
UniGeneRn.202950; -; .
ProteinModelPortalQ63413; -; .
SMRQ63413; 46-426; .
STRINGQ63413; -; .
World-2DPAGE0004:Q63413; -; .
PRIDEQ63413; -; .
EnsemblENSRNOT00000001115; ENSRNOP00000001115; ENSRNOG00000000841; .
GeneID114612; -; .
KEGGrno:114612; -; .
UCSCNM_133300; rat; .
CTD114612; -; .
RGD70923; Bat1; .
eggNOGroNOG12519; -; .
GeneTreeENSGT00580000081513; -; .
HOVERGENHBG107334; -; .
InParanoidQ63413; -; .
OMAIQKDEET; -; .
OrthoDBEOG4XSKPX; -; .
PhylomeDBQ63413; -; .
NextBio618775; -; .
GenevestigatorQ63413; -; .
GermOnlineENSRNOG00000000841; Rattus norvegicus; .
GOGO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell; .
GOGO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW; .
GOGO:0005524; F:ATP binding; IEA:UniProtKB-KW; .
InterProIPR014001; DEAD-like_helicase; .
InterProIPR011545; DNA/RNA_helicase_DEAD/DEAH_N; .
InterProIPR001650; Helicase_C; .
InterProIPR014014; RNA_helicase_DEAD_Q_motif; .
KOK12812; -; .
PfamPF00270; DEAD; 1; .
PfamPF00271; Helicase_C; 1; .
SMARTSM00487; DEXDc; 1; .
SMARTSM00490; HELICc; 1; .
PROSITEPS51192; HELICASE_ATP_BIND_1; 1; .
PROSITEPS51194; HELICASE_CTER; 1; .
PROSITEPS51195; Q_MOTIF; 1; .





Searching in 'World-2DPAGE Repository [0001]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0001):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0001)



Searching in 'World-2DPAGE Repository [0002]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0002):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0002)



Searching in 'World-2DPAGE Repository [0003]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0003):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0003)



Searching in 'World-2DPAGE Repository [0005]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0005):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0005)



Searching in 'World-2DPAGE Repository [0006]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0006):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0006)



Searching in 'World-2DPAGE Repository [0007]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0007):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0007)



Searching in 'World-2DPAGE Repository [0008]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0008):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0008)



Searching in 'World-2DPAGE Repository [0009]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0009):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0009)



Searching in 'World-2DPAGE Repository [0010]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0010):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0010)



Searching in 'World-2DPAGE Repository [0011]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0011):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0011)



Searching in 'World-2DPAGE Repository [0012]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0012):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0012)



Searching in 'World-2DPAGE Repository [0017]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0017):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0017)



Searching in 'World-2DPAGE Repository [0018]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0018):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0018)



Searching in 'World-2DPAGE Repository [0019]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0019):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0019)



Searching in 'World-2DPAGE Repository [0020]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0020):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0020)



Searching in 'World-2DPAGE Repository [0021]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0021):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0021)



Searching in 'World-2DPAGE Repository [0022]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0022):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0022)



Searching in 'World-2DPAGE Repository [0023]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0023):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0023)



Searching in 'World-2DPAGE Repository [0024]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0024):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0024)



Searching in 'World-2DPAGE Repository [0026]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0026):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0026)



Searching in 'World-2DPAGE Repository [0027]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0027):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0027)



Searching in 'World-2DPAGE Repository [0029]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0029):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0029)



Searching in 'World-2DPAGE Repository [0030]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0030):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0030)



Searching in 'World-2DPAGE Repository [0031]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0031):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0031)



Searching in 'World-2DPAGE Repository [0032]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0032):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0032)



Searching in 'World-2DPAGE Repository [0034]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0034):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0034)



Searching in 'World-2DPAGE Repository [0035]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0035):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0035)



Searching in 'World-2DPAGE Repository [0036]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0036):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0036)



Searching in 'World-2DPAGE Repository [0037]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0037):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0037)



Searching in 'World-2DPAGE Repository [0038]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0038):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0038)



Searching in 'World-2DPAGE Repository [0039]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0039):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0039)



Searching in 'World-2DPAGE Repository [0040]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0040):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0040)



Searching in 'World-2DPAGE Repository [0042]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0042):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0042)



Searching in 'World-2DPAGE Repository [0043]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0043):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0043)



Searching in 'World-2DPAGE Repository [0044]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0044):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0044)



Searching in 'World-2DPAGE Repository [0046]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0046):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0046)



Searching in 'World-2DPAGE Repository [0047]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0047):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0047)



Searching in 'World-2DPAGE Repository [0050]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0050):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0050)



Searching in 'World-2DPAGE Repository [0051]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0051):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0051)



Searching in 'World-2DPAGE Repository [0053]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0053):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0053)



Searching in 'World-2DPAGE Repository [0054]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0054):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0054)



Searching in 'World-2DPAGE Repository [0056]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0056):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0056)



Searching in 'World-2DPAGE Repository [0059]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0059):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0059)



Searching in 'World-2DPAGE Repository [0061]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0061):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0061)



Searching in 'World-2DPAGE Repository [0062]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0062):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0062)



Searching in 'World-2DPAGE Repository [0063]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0063):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0063)



Searching in 'World-2DPAGE Repository [0066]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0066):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0066)



Searching in 'World-2DPAGE Repository [0068]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0068):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0068)



Searching in 'World-2DPAGE Repository [0069]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0069):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0069)



Searching in 'World-2DPAGE Repository [0076]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0076):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0076)



Searching in 'World-2DPAGE Repository [0077]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0077):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0077)



Searching in 'World-2DPAGE Repository [0080]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0080):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0080)



Searching in 'World-2DPAGE Repository [0084]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0084):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0084)



Searching in 'World-2DPAGE Repository [0085]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0085):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0085)



Searching in 'World-2DPAGE Repository [0088]' for entry matching: DX39B_RAT




World-2DPAGE Repository (0088):  DX39B_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0088)




World-2DPAGE Repository image

World-2DPAGE Repository (search AC)


Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the ExPASy web server