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Searching in 'World-2DPAGE Repository [0004]' for entry matching: MDHC_RAT

World-2DPAGE Repository (0004):  MDHC_RAT


General information about the entry
View entry in simple text format
Entry nameMDHC_RAT
Primary accession numberO88989
integrated into World-2DPAGE Repository (0004) on October 13, 2008 (release 1)
2D Annotations were last modified onMay 18, 2011 (version 2)
General Annotations were last modified on December 22, 2011 (version 2)
Name and origin of the protein
DescriptionRecName: Full=Malate dehydrogenase, cytoplasmic; EC=; AltName: Full=Cytosolic malate dehydrogenase;.
Gene nameName=Mdh1
Annotated speciesRattus norvegicus (Rat) [TaxID: 10116]
TaxonomyEukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
PubMed=19343716; DOI=10.1002/pmic.200800664; [NCBI, EBI, Israel, Japan]
Maurya D.K., Sundaram C.S., Bhargava P.
''Proteome profile of the mature rat olfactory bulb''
Proteomics 9(1):2593-2599 (2009)
2D PAGE maps for identified proteins
How to interpret a protein

OB21DSUB {2-DE gel for Olfactory bulb proteome}
Rattus norvegicus (Rat)
Tissue: Olfactory bulb
  map experimental info

pI=5.77; Mw=37000  [identification data]
pI=5.92; Mw=37000  [identification data]

MAPPING (identification):
SPOT 527: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1];
SPOT 528: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1].

Data from Dr. Purnima Bhargava, Centre for Cellular and Molecular Biology, India
UniProtKB/Swiss-ProtO88989; MDHC_RAT.

2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.

External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_12
Entry nameMDHC_RAT
Primary accession numberO88989
Secondary accession number(s) O88585 Q6PCV2
Sequence was last modified on January 23, 2007 (version 3)
Annotations were last modified on November 16, 2011 (version 84)
Name and origin of the protein
DescriptionRecName: Full=Malate dehydrogenase, cytoplasmic; EC=; AltName: Full=Cytosolic malate dehydrogenase;
Gene nameName=Mdh1
Encoded onName=Mdh1; Synonyms=Mdh
KeywordsAcetylation; Complete proteome; Cytoplasm; Direct protein sequencing; NAD; Oxidoreductase; Phosphoprotein; Reference proteome; Tricarboxylic acid cycle; Ubl conjugation.
Copyrighted by the UniProt Consortium, see Distributed under the Creative Commons Attribution-NoDerivs License
EMBLAF093773; AAC64180.1; -; mRNA
EMBLBC059124; AAH59124.1; -; mRNA
EMBLAF075574; AAC26799.1; -; mRNA
IPIIPI00198717; -; .
RefSeqNP_150238.1; NM_033235.1; .
UniGeneRn.13492; -; .
ProteinModelPortalO88989; -; .
SMRO88989; 2-334; .
IntActO88989; 1; .
STRINGO88989; -; .
PhosphoSiteO88989; -; .
World-2DPAGE0004:O88989; -; .
PRIDEO88989; -; .
EnsemblENSRNOT00000011429; ENSRNOP00000011429; ENSRNOG00000008103; .
GeneID24551; -; .
KEGGrno:24551; -; .
NMPDRfig|10116.3.peg.10844; -; .
UCSCNM_033235; rat; .
CTD4190; -; .
RGD3072; Mdh1; .
eggNOGroNOG11216; -; .
GeneTreeENSGT00530000063410; -; .
HOVERGENHBG006340; -; .
InParanoidO88989; -; .
OrthoDBEOG4CVG78; -; .
PhylomeDBO88989; -; .
NextBio603654; -; .
ArrayExpressO88989; -; .
GenevestigatorO88989; -; .
GermOnlineENSRNOG00000008103; Rattus norvegicus; .
GOGO:0005625; C:soluble fraction; IDA:RGD; .
GOGO:0030060; F:L-malate dehydrogenase activity; IDA:RGD; .
GOGO:0051287; F:NAD binding; IDA:RGD; .
GOGO:0044262; P:cellular carbohydrate metabolic process; IEA:InterPro; .
GOGO:0006108; P:malate metabolic process; IDA:RGD; .
GOGO:0006734; P:NADH metabolic process; IDA:RGD; .
GOGO:0006107; P:oxaloacetate metabolic process; IDA:RGD; .
GOGO:0006099; P:tricarboxylic acid cycle; IEA:UniProtKB-KW; .
InterProIPR001557; L-lactate/malate_DH; .
InterProIPR022383; Lactate/malate_DH_C; .
InterProIPR001236; Lactate/malate_DH_N; .
InterProIPR015955; Lactate_DH/Glyco_Ohase_4_C; .
InterProIPR001252; Malate_DH_AS; .
InterProIPR011274; Malate_DH_NAD-dep_euk; .
InterProIPR010945; Malate_DH_type2; .
InterProIPR016040; NAD(P)-bd_dom; .
Gene3DG3DSA:; lact_mal_DH; 1; .
Gene3DG3DSA:; NAD(P)-bd; 1; .
KOK00025; -; .
PfamPF02866; Ldh_1_C; 1; .
PfamPF00056; Ldh_1_N; 1; .
PIRSFPIRSF000102; Lac_mal_DH; 1; .
SUPFAMSSF56327; Lactate_DH/Glyco_hydro_4_C; 1; .
TIGRFAMsTIGR01759; MalateDH-SF1; 1; .
TIGRFAMsTIGR01758; MDH_euk_cyt; 1; .
PROSITEPS00068; MDH; 1; .

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World-2DPAGE Repository (search AC)

Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the Expasy web server