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World-2DPAGE Repository
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Select Remote Interfaces
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SWISS-2DPAGE
World-2DPAGE Portal
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Searching in 'World-2DPAGE Repository [0030]' for entry
matching:
NSF1C_RAT
World-2DPAGE Repository
(0030):
NSF1C_RAT
NSF1C_RAT
General information about the entry
View entry in simple text format
Entry name
NSF1C_RAT
Primary accession number
O35987
integrated into World-2DPAGE Repository (0030) on
November 9, 2010 (release 1)
2D Annotations were last modified on
June 21, 2011 (version 2)
General Annotations were last modified on
November 23, 2011 (version 2)
Name and origin of the protein
Description
RecName: Full=NSFL1 cofactor p47; AltName: Full=XY body-associated protein XY40; AltName: Full=p97 cofactor p47;.
Gene name
Name=Nsfl1c
Annotated species
Rattus norvegicus (Rat) [TaxID:
10116
]
Taxonomy
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
References
[1]
2D-PAGE GEL CHARACTERIZATION
DOI=
10.1002/pmic.201000006
;
D'Hertog W., Maris M., Thorrez L., Waelkens E., Overbergh L., Mathieu C.
''Two-dimensional gel proteome reference map of INS-1E cells''
Proteomics 11(7):1365-1369 (2011)
2D PAGE maps for identified proteins
How to interpret a protein
RAT_INS1E_4-7
{INS-1E cell line, a model rat cell line for pancreatic beta cells, PH4-7}
Rattus norvegicus (Rat)
map experimental info
RAT_INS1E_4-7
MAP LOCATIONS:
SPOT 1205
:
pI=4.98; Mw=55813
[identification data]
SPOT 1218
:
pI=5.13; Mw=55198
[identification data]
SPOT 1223
:
pI=5.00; Mw=55046
[identification data]
SPOT 1230
:
pI=4.86; Mw=54894
[identification data]
SPOT 1236
:
pI=4.94; Mw=54894
[identification data]
SPOT 1245
:
pI=5.06; Mw=54365
[identification data]
SPOT 3028
:
pI=4.90; Mw=54742
[identification data]
IDENTIFICATION:
SPOT 1205: Mascot protein score=210. Number of peptides=4 [
1
]
SPOT 1218: Mascot protein score=60. Number of peptides=3 [
1
]; SPOT 1223: Mascot protein score=397. Number of peptides=7 [
1
]; SPOT 1230: Mascot protein score=122. Number of peptides=5 [
1
]; SPOT 1236: Mascot protein score=210. Number of peptides=4 [
1
]; SPOT 1245: Mascot protein score=419. Number of peptides=8 [
1
]; SPOT 3028: Mascot protein score=642. Number of peptides=11 [
1
].
MAPPING (identification):
SPOT
1205
:
Tandem mass spectrometry
[
1
];
SPOT
1218
:
Tandem mass spectrometry
[
1
];
SPOT
1223
:
Tandem mass spectrometry
[
1
];
SPOT
1230
:
Tandem mass spectrometry
[
1
];
SPOT
1236
:
Tandem mass spectrometry
[
1
];
SPOT
1245
:
Tandem mass spectrometry
[
1
];
SPOT
3028
:
Tandem mass spectrometry
[
1
].
Copyright
Data from Dr. Wannes D'Hertog, Catholic University Leuven, Belgium
Cross-references
UniProtKB/Swiss-Prot
O35987; NSF1C_RAT.
World-2DPAGE Repository
O35987; NSF1C_RAT.
2D PAGE maps for identified proteins
How to interpret a protein map
You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
Warning 1
: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
Warning 2
: the 2D PAGE map is built on demand. This may take some few seconds to be computed.
External data extracted from
UniProtKB/Swiss-Prot
Extracted from
UniProtKB/Swiss-Prot
, release:
2011_11
Entry name
NSF1C_RAT
Primary accession number
O35987
Sequence was last modified on
January 1, 1998 (version 1)
Annotations were last modified on
November 16, 2011 (version 99)
Name and origin of the protein
Description
RecName: Full=NSFL1 cofactor p47; AltName: Full=XY body-associated protein XY40; AltName: Full=p97 cofactor p47;
Gene name
Name=Nsfl1c
Encoded on
Name=Nsfl1c
Keywords
3D-structure
;
Chromosome
;
Complete proteome
;
Direct protein sequencing
;
Golgi apparatus
;
Lipid-binding
;
Nucleus
;
Phosphoprotein
;
Reference proteome
.
Copyright
Copyrighted by the UniProt Consortium, see
https://www.uniprot.org/help/license
. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBL
Y10769; CAA71742.1
; -; mRNA
EMBL
AB002086; BAA21659.1
; -; mRNA
EMBL
BC072464; AAH72464.1
; -; mRNA
IPI
IPI00214262; -
; .
RefSeq
NP_114187.1; NM_031981.1
; .
UniGene
Rn.2771; -
; .
PDB
1I42; NMR
; -; A=282-370
PDB
1JRU; NMR
; -; A=282-370
PDB
1S3S; X-ray
; 2.90 A; G/H/I=244-370
PDB
1V92; NMR
; -; A=1-46
PDB
1VAZ; NMR
; -; A=171-246
PDBsum
1I42; -
; .
PDBsum
1JRU; -
; .
PDBsum
1S3S; -
; .
PDBsum
1V92; -
; .
PDBsum
1VAZ; -
; .
ProteinModelPortal
O35987; -
; .
SMR
O35987; 1-46
; 171-246; 253-370
IntAct
O35987; 15
; .
MINT
MINT-1954288; -
; .
STRING
O35987; -
; .
PhosphoSite
O35987; -
; .
PRIDE
O35987; -
; .
Ensembl
ENSRNOT00000011654; ENSRNOP00000011654
; ENSRNOG00000008604; .
GeneID
83809; -
; .
KEGG
rno:83809; -
; .
UCSC
NM_031981; rat
; .
CTD
55968; -
; .
RGD
619952; Nsfl1c
; .
eggNOG
roNOG06792; -
; .
GeneTree
ENSGT00520000055567; -
; .
HOVERGEN
HBG054517; -
; .
PhylomeDB
O35987; -
; .
NextBio
616417; -
; .
ArrayExpress
O35987; -
; .
Genevestigator
O35987; -
; .
GermOnline
ENSRNOG00000008604; Rattus norvegicus
; .
GO
GO:0005694; C:chromosome
; IEA:UniProtKB-SubCell; .
GO
GO:0005829; C:cytosol
; IDA:RGD; .
GO
GO:0005795; C:Golgi stack
; IEA:UniProtKB-SubCell; .
GO
GO:0005634; C:nucleus
; IEA:UniProtKB-SubCell; .
GO
GO:0051117; F:ATPase binding
; IPI:RGD; .
GO
GO:0008289; F:lipid binding
; IEA:UniProtKB-KW; .
GO
GO:0043130; F:ubiquitin binding
; IDA:BHF-UCL; .
GO
GO:0007030; P:Golgi organization
; IDA:RGD; .
GO
GO:0061025; P:membrane fusion
; IDA:RGD; .
InterPro
IPR012989; SEP_domain
; .
InterPro
IPR009060; UBA-like
; .
InterPro
IPR001012; UBX
; .
KO
K14012; -
; .
Pfam
PF08059; SEP
; 1; .
Pfam
PF00789; UBX
; 1; .
SMART
SM00553; SEP
; 1; .
SMART
SM00166; UBX
; 1; .
SUPFAM
SSF102848; SEP
; 1; .
SUPFAM
SSF46934; UBA_like
; 1; .
PROSITE
PS51399; SEP
; 1; .
PROSITE
PS50033; UBX
; 1; .
World-2DPAGE Repository (search AC)
Database constructed and maintained by
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ver. 3.10.2
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