World-2DPAGE Repository
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World-2DPAGE Repository
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Select Remote Interfaces
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SWISS-2DPAGE
World-2DPAGE Portal
Exclude local DBs
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Searching in 'World-2DPAGE Repository [0004]' for entry
matching:
ODPB_RAT
World-2DPAGE Repository
(0004):
ODPB_RAT
ODPB_RAT
General information about the entry
View entry in simple text format
Entry name
ODPB_RAT
Primary accession number
P49432
integrated into World-2DPAGE Repository (0004) on
October 13, 2008 (release 1)
2D Annotations were last modified on
May 18, 2011 (version 2)
General Annotations were last modified on
December 22, 2011 (version 2)
Name and origin of the protein
Description
RecName: Full=Pyruvate dehydrogenase E1 component subunit beta, mitochondrial; Short=PDHE1-B; EC=1.2.4.1; Flags: Precursor;.
Gene name
Name=Pdhb
Annotated species
Rattus norvegicus (Rat) [TaxID:
10116
]
Taxonomy
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
References
[1]
MAPPING ON GEL
PubMed=19343716; DOI=
10.1002/pmic.200800664
; [
NCBI
,
EBI
,
Israel
,
Japan
]
Maurya D.K., Sundaram C.S., Bhargava P.
''Proteome profile of the mature rat olfactory bulb''
Proteomics 9(1):2593-2599 (2009)
2D PAGE maps for identified proteins
How to interpret a protein
OB21DSUB
{2-DE gel for Olfactory bulb proteome}
Rattus norvegicus (Rat)
Tissue: Olfactory bulb
map experimental info
OB21DSUB
MAP LOCATIONS:
SPOT 532
:
pI=5.38; Mw=37000
[identification data]
MAPPING (identification):
SPOT
532
:
Peptide mass fingerprinting
[
1
];
Tandem mass spectrometry
[
1
].
Copyright
Data from Dr. Purnima Bhargava, Centre for Cellular and Molecular Biology, India
Cross-references
UniProtKB/Swiss-Prot
P49432; ODPB_RAT.
2D PAGE maps for identified proteins
How to interpret a protein map
You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
Warning 1
: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
Warning 2
: the 2D PAGE map is built on demand. This may take some few seconds to be computed.
External data extracted from
UniProtKB/Swiss-Prot
Extracted from
UniProtKB/Swiss-Prot
, release:
2011_12
Entry name
ODPB_RAT
Primary accession number
P49432
Secondary accession number(s)
Q6AY95
Sequence was last modified on
January 9, 2007 (version 2)
Annotations were last modified on
November 16, 2011 (version 95)
Name and origin of the protein
Description
RecName: Full=Pyruvate dehydrogenase E1 component subunit beta, mitochondrial; Short=PDHE1-B; EC=1.2.4.1; Flags: Precursor;
Gene name
Name=Pdhb
Encoded on
Name=Pdhb
Keywords
Complete proteome
;
Direct protein sequencing
;
Glycolysis
;
Mitochondrion
;
Oxidoreductase
;
Phosphoprotein
;
Pyruvate
;
Reference proteome
;
Thiamine pyrophosphate
;
Transit peptide
.
Copyright
Copyrighted by the UniProt Consortium, see
https://www.uniprot.org/help/license
. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBL
BC079137; AAH79137.1
; -; mRNA
IPI
IPI00194324; -
; .
PIR
S15892; S15892
; .
RefSeq
NP_001007621.1; NM_001007620.1
; .
UniGene
Rn.102424; -
; .
ProteinModelPortal
P49432; -
; .
SMR
P49432; 30-359
; .
IntAct
P49432; 1
; .
MINT
MINT-4592348; -
; .
STRING
P49432; -
; .
PhosphoSite
P49432; -
; .
UCD-2DPAGE
P49432; -
; .
World-2DPAGE
0004:P49432; -
; .
PRIDE
P49432; -
; .
Ensembl
ENSRNOT00000010545; ENSRNOP00000010545
; ENSRNOG00000007895; .
GeneID
289950; -
; .
KEGG
rno:289950; -
; .
NMPDR
fig|10116.3.peg.11094; -
; .
UCSC
NM_001007620; rat
; .
CTD
5162; -
; .
RGD
1359146; Pdhb
; .
eggNOG
roNOG10273; -
; .
GeneTree
ENSGT00530000063423; -
; .
HOVERGEN
HBG000917; -
; .
InParanoid
P49432; -
; .
OMA
MSGGLQS; -
; .
OrthoDB
EOG4CJVHD; -
; .
PhylomeDB
P49432; -
; .
NextBio
630523; -
; .
ArrayExpress
P49432; -
; .
Genevestigator
P49432; -
; .
GermOnline
ENSRNOG00000007895; Rattus norvegicus
; .
GO
GO:0005759; C:mitochondrial matrix
; IEA:UniProtKB-SubCell; .
GO
GO:0045254; C:pyruvate dehydrogenase complex
; IDA:RGD; .
GO
GO:0004739; F:pyruvate dehydrogenase (acetyl-transferring) activity
; IDA:RGD; .
GO
GO:0006086; P:acetyl-CoA biosynthetic process from pyruvate
; IDA:RGD; .
GO
GO:0006096; P:glycolysis
; IEA:UniProtKB-KW; .
InterPro
IPR009014; Transketo_C/Pyr-ferredox_oxred
; .
InterPro
IPR015941; Transketolase-like_C
; .
InterPro
IPR005475; Transketolase-like_Pyr-bd
; .
InterPro
IPR005476; Transketolase_C
; .
Gene3D
G3DSA:3.40.50.920; Transketo_C_like
; 1; .
KO
K00162; -
; .
Pfam
PF02779; Transket_pyr
; 1; .
Pfam
PF02780; Transketolase_C
; 1; .
SMART
SM00861; Transket_pyr
; 1; .
SUPFAM
SSF52922; Transketo_C_like
; 1; .
World-2DPAGE Repository (search AC)
Database constructed and maintained by
SIB
, using the
Make2D-DB II
package (
ver. 3.10.2
) from the
World-2DPAGE Constellation
of the
Expasy web server