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Searching in 'World-2DPAGE Repository [0004]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0004):  OTUB1_RAT


OTUB1_RAT


General information about the entry
View entry in simple text format
Entry nameOTUB1_RAT
Primary accession numberB2RYG6
integrated into World-2DPAGE Repository (0004) on October 13, 2008 (release 1)
2D Annotations were last modified onMay 18, 2011 (version 2)
General Annotations were last modified on December 22, 2011 (version 2)
Name and origin of the protein
DescriptionRecName: Full=Ubiquitin thioesterase OTUB1; EC=3.4.19.12; AltName: Full=Deubiquitinating enzyme OTUB1; AltName: Full=OTU domain-containing ubiquitin aldehyde-binding protein 1; AltName: Full=Otubain-1; AltName: Full=Ubiquitin-specific-processing protease OTUB1;.
Gene nameName=Otub1
Annotated speciesRattus norvegicus (Rat) [TaxID: 10116]
TaxonomyEukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
References
[1]   MAPPING ON GEL
PubMed=19343716; DOI=10.1002/pmic.200800664; [NCBI, EBI, Israel, Japan]
Maurya D.K., Sundaram C.S., Bhargava P.
''Proteome profile of the mature rat olfactory bulb''
Proteomics 9(1):2593-2599 (2009)
2D PAGE maps for identified proteins
How to interpret a protein

OB21DSUB {2-DE gel for Olfactory bulb proteome}
Rattus norvegicus (Rat)
Tissue: Olfactory bulb
OB21DSUB
  map experimental info
 
OB21DSUB

MAP LOCATIONS:
pI=5.09; Mw=31000  [identification data]

MAPPING (identification):
SPOT 539: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1].

Copyright
Data from Dr. Purnima Bhargava, Centre for Cellular and Molecular Biology, India
Cross-references
UniProtKB/Swiss-ProtB2RYG6; OTUB1_RAT.



2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_12
Entry nameOTUB1_RAT
Primary accession numberB2RYG6
Sequence was last modified on July 1, 2008 (version 1)
Annotations were last modified on November 16, 2011 (version 34)
Name and origin of the protein
DescriptionRecName: Full=Ubiquitin thioesterase OTUB1; EC=3.4.19.12; AltName: Full=Deubiquitinating enzyme OTUB1; AltName: Full=OTU domain-containing ubiquitin aldehyde-binding protein 1; AltName: Full=Otubain-1; AltName: Full=Ubiquitin-specific-processing protease OTUB1;
Gene nameName=Otub1
Encoded onName=Otub1
KeywordsAcetylation; Adaptive immunity; Complete proteome; Cytoplasm; Hydrolase; Immunity; Phosphoprotein; Protease; Reference proteome; Thiol protease; Ubl conjugation pathway.
Copyright
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBLCH473953; EDM12666.1; -; Genomic_DNA
EMBLBC166771; AAI66771.1; -; mRNA
IPIIPI00371462; -; .
RefSeqNP_001099802.1; NM_001106332.1; .
UniGeneRn.9218; -; .
ProteinModelPortalB2RYG6; -; .
SMRB2RYG6; 45-271; .
STRINGB2RYG6; -; .
PhosphoSiteB2RYG6; -; .
World-2DPAGE0004:B2RYG6; -; .
PRIDEB2RYG6; -; .
EnsemblENSRNOT00000028752; ENSRNOP00000028752; ENSRNOG00000021175; .
GeneID293705; -; .
KEGGrno:293705; -; .
CTD55611; -; .
RGD1311329; Otub1; .
eggNOGmaNOG17115; -; .
GeneTreeENSGT00390000006979; -; .
HOVERGENHBG053383; -; .
OMAYDILYPN; -; .
OrthoDBEOG47H5QS; -; .
PhylomeDBB2RYG6; -; .
NextBio636821; -; .
GenevestigatorB2RYG6; -; .
GOGO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell; .
GOGO:0019784; F:NEDD8-specific protease activity; ISS:UniProtKB; .
GOGO:0008242; F:omega peptidase activity; IEA:InterPro; .
GOGO:0043130; F:ubiquitin binding; ISS:UniProtKB; .
GOGO:0004843; F:ubiquitin-specific protease activity; ISS:UniProtKB; .
GOGO:0071108; P:protein K48-linked deubiquitination; ISS:UniProtKB; .
GOGO:0006508; P:proteolysis; IEA:UniProtKB-KW; .
InterProIPR003323; OTU; .
InterProIPR019400; Peptidase_C65_otubain; .
InterProIPR016615; Ubiquitin_thioesterase_Otubain; .
KOK09602; -; .
PfamPF10275; Peptidase_C65; 1; .
PIRSFPIRSF013503; Ubiquitin_thioesterase_Otubain; 1; .
PROSITEPS50802; OTU; 1; .





Searching in 'World-2DPAGE Repository [0014]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0014):  OTUB1_RAT


OTUB1_RAT


General information about the entry
View entry in simple text format
Entry nameOTUB1_RAT
Primary accession numberB2RYG6
integrated into World-2DPAGE Repository (0014) on October 13, 2008 (release 1)
2D Annotations were last modified onJune 1, 2011 (version 3)
General Annotations were last modified on November 25, 2011 (version 2)
Name and origin of the protein
DescriptionRecName: Full=Ubiquitin thioesterase OTUB1; EC=3.4.19.12; AltName: Full=Deubiquitinating enzyme OTUB1; AltName: Full=OTU domain-containing ubiquitin aldehyde-binding protein 1; AltName: Full=Otubain-1; AltName: Full=Ubiquitin-specific-processing protease OTUB1;.
Gene nameName=Otub1
Annotated speciesRattus norvegicus (Rat) [TaxID: 10116]
TaxonomyEukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
References
[1]   2D-PAGE GEL CHARACTERIZATION
DOI=10.1002/pmic.200900680;
Maurya D.K., Sundaram C.S., Bhargava P.
''Proteome profile of whole cerebellum of the mature rat''
Proteomics 10(23):4311-4319 (2010)
2D PAGE maps for identified proteins
How to interpret a protein

RAT_CEREBELLUM_21D {Proteome of 21 days old rat cerebellum}
Rattus norvegicus (Rat)
Tissue: Cerebellum
RAT_CEREBELLUM_21D
  map experimental info
 
RAT_CEREBELLUM_21D

MAP LOCATIONS:
pI=5.15; Mw=38000  [identification data]

IDENTIFICATION: SPOT 3034: SeqCov=54%. MascotPMF=126 [1].
MAPPING (identification):
SPOT 3034: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1].

Copyright
Data from Dr. Purnima Bhargava, Centre for Cellular and Molecular Biology, India
Cross-references
PRIDE10017.
UniProtKB/Swiss-ProtB2RYG6; OTUB1_RAT.



2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_11
Entry nameOTUB1_RAT
Primary accession numberB2RYG6
Sequence was last modified on July 1, 2008 (version 1)
Annotations were last modified on November 16, 2011 (version 34)
Name and origin of the protein
DescriptionRecName: Full=Ubiquitin thioesterase OTUB1; EC=3.4.19.12; AltName: Full=Deubiquitinating enzyme OTUB1; AltName: Full=OTU domain-containing ubiquitin aldehyde-binding protein 1; AltName: Full=Otubain-1; AltName: Full=Ubiquitin-specific-processing protease OTUB1;
Gene nameName=Otub1
Encoded onName=Otub1
KeywordsAcetylation; Adaptive immunity; Complete proteome; Cytoplasm; Hydrolase; Immunity; Phosphoprotein; Protease; Reference proteome; Thiol protease; Ubl conjugation pathway.
Copyright
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBLCH473953; EDM12666.1; -; Genomic_DNA
EMBLBC166771; AAI66771.1; -; mRNA
IPIIPI00371462; -; .
RefSeqNP_001099802.1; NM_001106332.1; .
UniGeneRn.9218; -; .
ProteinModelPortalB2RYG6; -; .
SMRB2RYG6; 45-271; .
STRINGB2RYG6; -; .
PhosphoSiteB2RYG6; -; .
World-2DPAGE0004:B2RYG6; -; .
PRIDEB2RYG6; -; .
EnsemblENSRNOT00000028752; ENSRNOP00000028752; ENSRNOG00000021175; .
GeneID293705; -; .
KEGGrno:293705; -; .
CTD55611; -; .
RGD1311329; Otub1; .
eggNOGmaNOG17115; -; .
GeneTreeENSGT00390000006979; -; .
HOVERGENHBG053383; -; .
OMAYDILYPN; -; .
OrthoDBEOG47H5QS; -; .
PhylomeDBB2RYG6; -; .
NextBio636821; -; .
GenevestigatorB2RYG6; -; .
GOGO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell; .
GOGO:0019784; F:NEDD8-specific protease activity; ISS:UniProtKB; .
GOGO:0008242; F:omega peptidase activity; IEA:InterPro; .
GOGO:0043130; F:ubiquitin binding; ISS:UniProtKB; .
GOGO:0004843; F:ubiquitin-specific protease activity; ISS:UniProtKB; .
GOGO:0071108; P:protein K48-linked deubiquitination; ISS:UniProtKB; .
GOGO:0006508; P:proteolysis; IEA:UniProtKB-KW; .
InterProIPR003323; OTU; .
InterProIPR019400; Peptidase_C65_otubain; .
InterProIPR016615; Ubiquitin_thioesterase_Otubain; .
KOK09602; -; .
PfamPF10275; Peptidase_C65; 1; .
PIRSFPIRSF013503; Ubiquitin_thioesterase_Otubain; 1; .
PROSITEPS50802; OTU; 1; .





Searching in 'World-2DPAGE Repository [0001]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0001):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0001)



Searching in 'World-2DPAGE Repository [0002]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0002):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0002)



Searching in 'World-2DPAGE Repository [0003]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0003):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0003)



Searching in 'World-2DPAGE Repository [0005]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0005):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0005)



Searching in 'World-2DPAGE Repository [0006]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0006):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0006)



Searching in 'World-2DPAGE Repository [0007]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0007):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0007)



Searching in 'World-2DPAGE Repository [0008]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0008):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0008)



Searching in 'World-2DPAGE Repository [0009]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0009):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0009)



Searching in 'World-2DPAGE Repository [0010]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0010):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0010)



Searching in 'World-2DPAGE Repository [0011]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0011):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0011)



Searching in 'World-2DPAGE Repository [0012]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0012):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0012)



Searching in 'World-2DPAGE Repository [0017]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0017):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0017)



Searching in 'World-2DPAGE Repository [0018]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0018):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0018)



Searching in 'World-2DPAGE Repository [0019]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0019):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0019)



Searching in 'World-2DPAGE Repository [0020]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0020):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0020)



Searching in 'World-2DPAGE Repository [0021]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0021):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0021)



Searching in 'World-2DPAGE Repository [0022]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0022):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0022)



Searching in 'World-2DPAGE Repository [0023]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0023):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0023)



Searching in 'World-2DPAGE Repository [0024]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0024):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0024)



Searching in 'World-2DPAGE Repository [0026]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0026):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0026)



Searching in 'World-2DPAGE Repository [0027]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0027):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0027)



Searching in 'World-2DPAGE Repository [0029]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0029):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0029)



Searching in 'World-2DPAGE Repository [0030]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0030):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0030)



Searching in 'World-2DPAGE Repository [0031]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0031):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0031)



Searching in 'World-2DPAGE Repository [0032]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0032):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0032)



Searching in 'World-2DPAGE Repository [0034]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0034):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0034)



Searching in 'World-2DPAGE Repository [0035]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0035):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0035)



Searching in 'World-2DPAGE Repository [0036]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0036):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0036)



Searching in 'World-2DPAGE Repository [0037]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0037):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0037)



Searching in 'World-2DPAGE Repository [0038]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0038):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0038)



Searching in 'World-2DPAGE Repository [0039]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0039):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0039)



Searching in 'World-2DPAGE Repository [0040]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0040):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0040)



Searching in 'World-2DPAGE Repository [0042]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0042):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0042)



Searching in 'World-2DPAGE Repository [0043]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0043):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0043)



Searching in 'World-2DPAGE Repository [0044]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0044):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0044)



Searching in 'World-2DPAGE Repository [0046]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0046):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0046)



Searching in 'World-2DPAGE Repository [0047]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0047):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0047)



Searching in 'World-2DPAGE Repository [0050]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0050):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0050)



Searching in 'World-2DPAGE Repository [0051]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0051):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0051)



Searching in 'World-2DPAGE Repository [0053]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0053):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0053)



Searching in 'World-2DPAGE Repository [0054]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0054):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0054)



Searching in 'World-2DPAGE Repository [0056]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0056):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0056)



Searching in 'World-2DPAGE Repository [0059]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0059):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0059)



Searching in 'World-2DPAGE Repository [0061]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0061):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0061)



Searching in 'World-2DPAGE Repository [0062]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0062):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0062)



Searching in 'World-2DPAGE Repository [0063]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0063):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0063)



Searching in 'World-2DPAGE Repository [0066]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0066):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0066)



Searching in 'World-2DPAGE Repository [0068]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0068):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0068)



Searching in 'World-2DPAGE Repository [0069]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0069):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0069)



Searching in 'World-2DPAGE Repository [0076]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0076):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0076)



Searching in 'World-2DPAGE Repository [0077]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0077):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0077)



Searching in 'World-2DPAGE Repository [0080]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0080):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0080)



Searching in 'World-2DPAGE Repository [0084]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0084):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0084)



Searching in 'World-2DPAGE Repository [0085]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0085):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0085)



Searching in 'World-2DPAGE Repository [0088]' for entry matching: OTUB1_RAT




World-2DPAGE Repository (0088):  OTUB1_RAT

This protein does not exist in the current release of World-2DPAGE Repository (0088)




World-2DPAGE Repository image

World-2DPAGE Repository (search AC)


Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the ExPASy web server