World-2DPAGE Repository

Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.

References

[1]	2D-PAGE GEL CHARACTERIZATION DOI=10.1002/pmic.200900680; Maurya D.K., Sundaram C.S., Bhargava P. ''Proteome profile of whole cerebellum of the mature rat'' Proteomics 10(23):4311-4319 (2010)

2D PAGE maps for identified proteins

How to interpret a protein

RAT_CEREBELLUM_21D {Proteome of 21 days old rat cerebellum}
Rattus norvegicus (Rat)
Tissue: Cerebellum

map experimental info

RAT_CEREBELLUM_21D

MAP LOCATIONS:

SPOT 3198:

pI=8.62; Mw=24000

[identification data]

IDENTIFICATION: SPOT 3198: SeqCov=30%. MascotPMF=60 [1].
MAPPING (identification):

SPOT 3198: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1].

Copyright

Data from Dr. Purnima Bhargava, Centre for Cellular and Molecular Biology, India

Cross-references

PRIDE

10017.

UniProtKB/Swiss-Prot

P07895; SODM_RAT.

2D PAGE maps for identified proteins
How to interpret a protein map You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw. Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly. Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.

External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_11
Entry name	SODM_RAT
Primary accession number	P07895
Sequence was last modified on	May 1, 1992 (version 2)
Annotations were last modified on	November 16, 2011 (version 110)
Name and origin of the protein
Description	RecName: Full=Superoxide dismutase [Mn], mitochondrial; EC=1.15.1.1; Flags: Precursor;
Gene name	Name=Sod2
Encoded on	Name=Sod2
Keywords	Acetylation; Complete proteome; Direct protein sequencing; Manganese; Metal-binding; Mitochondrion; Nitration; Oxidoreductase; Reference proteome; Transit peptide.
Copyright
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBL	Y00497; CAA68549.1; -; mRNA
EMBL	X56600; CAA39937.1; -; Genomic_DNA
EMBL	BC070913; AAH70913.1; -; mRNA
IPI	IPI00211593; -; .
PIR	S21661; DSRTN; .
RefSeq	NP_058747.1; NM_017051.2; .
UniGene	Rn.10488; -; .
ProteinModelPortal	P07895; -; .
SMR	P07895; 25-222; .
IntAct	P07895; 1; .
STRING	P07895; -; .
PhosphoSite	P07895; -; .
Rat-heart-2DPAGE	P07895; -; .
World-2DPAGE	0004:P07895; -; .
PRIDE	P07895; -; .
Ensembl	ENSRNOT00000025794; ENSRNOP00000025794; ENSRNOG00000019048; .
GeneID	24787; -; .
KEGG	rno:24787; -; .
UCSC	NM_017051; rat; .
CTD	6648; -; .
RGD	3732; Sod2; .
eggNOG	roNOG14008; -; .
GeneTree	ENSGT00390000011877; -; .
HOVERGEN	HBG004451; -; .
InParanoid	P07895; -; .
OMA	DYVNAIW; -; .
OrthoDB	EOG4R503R; -; .
PhylomeDB	P07895; -; .
NextBio	604412; -; .
ArrayExpress	P07895; -; .
Genevestigator	P07895; -; .
GermOnline	ENSRNOG00000019048; Rattus norvegicus; .
GO	GO:0042645; C:mitochondrial nucleoid; IDA:RGD; .
GO	GO:0005625; C:soluble fraction; IDA:RGD; .
GO	GO:0003677; F:DNA binding; IDA:RGD; .
GO	GO:0042802; F:identical protein binding; IDA:RGD; .
GO	GO:0030145; F:manganese ion binding; ISS:UniProtKB; .
GO	GO:0019825; F:oxygen binding; IDA:RGD; .
GO	GO:0004784; F:superoxide dismutase activity; ISS:UniProtKB; .
GO	GO:0001315; P:age-dependent response to reactive oxygen species; ISS:UniProtKB; .
GO	GO:0006916; P:anti-apoptosis; IMP:RGD; .
GO	GO:0071361; P:cellular response to ethanol; IEP:RGD; .
GO	GO:0050665; P:hydrogen peroxide biosynthetic process; IDA:RGD; .
GO	GO:0006357; P:regulation of transcription from RNA polymerase II promoter; ISS:UniProtKB; .
GO	GO:0019430; P:removal of superoxide radicals; IDA:RGD; .
GO	GO:0046686; P:response to cadmium ion; IEP:RGD; .
GO	GO:0042493; P:response to drug; IDA:RGD; .
GO	GO:0051602; P:response to electrical stimulus; IEP:RGD; .
GO	GO:0042542; P:response to hydrogen peroxide; IEP:RGD; .
GO	GO:0001666; P:response to hypoxia; IEP:RGD; .
GO	GO:0033591; P:response to L-ascorbic acid; IEP:RGD; .
GO	GO:0032496; P:response to lipopolysaccharide; IEP:RGD; .
GO	GO:0010042; P:response to manganese ion; IEP:RGD; .
GO	GO:0010269; P:response to selenium ion; IEP:RGD; .
GO	GO:0034021; P:response to silicon dioxide; IEP:RGD; .
GO	GO:0010043; P:response to zinc ion; IEP:RGD; .
InterPro	IPR001189; Mn/Fe_SOD; .
InterPro	IPR019833; Mn/Fe_SOD_BS; .
InterPro	IPR019832; Mn/Fe_SOD_C; .
InterPro	IPR019831; Mn/Fe_SOD_N; .
KO	K04564; -; .
PANTHER	PTHR11404; SODismutase; 1; .
Pfam	PF02777; Sod_Fe_C; 1; .
Pfam	PF00081; Sod_Fe_N; 1; .
PIRSF	PIRSF000349; SODismutase; 1; .
PRINTS	PR01703; MNSODISMTASE; .
SUPFAM	SSF46609; SODismutase; 1; .
SUPFAM	SSF54719; SODismutase; 1; .
PROSITE	PS00088; SOD_MN; 1; .

World-2DPAGE Repository (search AC)

Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the Expasy web server

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