World-2DPAGE Repository

Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.

References

[1]	MAPPING ON GEL PubMed=19343716; DOI=10.1002/pmic.200800664; [NCBI, EBI, Israel, Japan] Maurya D.K., Sundaram C.S., Bhargava P. ''Proteome profile of the mature rat olfactory bulb'' Proteomics 9(1):2593-2599 (2009)

2D PAGE maps for identified proteins

How to interpret a protein

OB21DSUB {2-DE gel for Olfactory bulb proteome}
Rattus norvegicus (Rat)
Tissue: Olfactory bulb

map experimental info

OB21DSUB

MAP LOCATIONS:

SPOT 373:

pI=4.78; Mw=50000

[identification data]

MAPPING (identification):

SPOT 373: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1].

Copyright

Data from Dr. Purnima Bhargava, Centre for Cellular and Molecular Biology, India

Cross-references

UniProtKB/Swiss-Prot

P10719; ATPB_RAT.

2D PAGE maps for identified proteins
How to interpret a protein map You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw. Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly. Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.

External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_12
Entry name	ATPB_RAT
Primary accession number	P10719
Secondary accession number(s)	Q499W0
Sequence was last modified on	April 1, 1990 (version 2)
Annotations were last modified on	November 16, 2011 (version 124)
Name and origin of the protein
Description	RecName: Full=ATP synthase subunit beta, mitochondrial; EC=3.6.3.14; Flags: Precursor;
Gene name	Name=Atp5b
Encoded on	Name=Atp5b
Keywords	3D-structure; Acetylation; ATP synthesis; ATP-binding; CF(1); Complete proteome; Direct protein sequencing; Hydrogen ion transport; Hydrolase; Ion transport; Membrane; Mitochondrion; Mitochondrion inner membrane; Nucleotide-binding; Phosphoprotein; Reference proteome; Transit peptide; Transport.
Copyright
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBL	BC099743; AAH99743.1; -; mRNA
EMBL	M25301; AAA57154.1; -; mRNA
EMBL	M19044; AAB02288.1; ALT_SEQ; mRNA
EMBL	M57634; AAA40778.1; -; mRNA
IPI	IPI00551812; -; .
PIR	A28701; A28701; .
PIR	A30160; A30160; .
RefSeq	NP_599191.1; NM_134364.1; .
UniGene	Rn.92965; -; .
PDB	1MAB; X-ray; 2.80 A; B=51-529
PDB	2F43; X-ray; 3.00 A; B=51-529
PDBsum	1MAB; -; .
PDBsum	2F43; -; .
ProteinModelPortal	P10719; -; .
SMR	P10719; 51-527; .
IntAct	P10719; 3; .
MINT	MINT-4587159; -; .
STRING	P10719; -; .
PhosphoSite	P10719; -; .
UCD-2DPAGE	P10719; -; .
World-2DPAGE	0004:P10719; -; .
PRIDE	P10719; -; .
GeneID	171374; -; .
KEGG	rno:171374; -; .
UCSC	NM_134364; rat; .
CTD	506; -; .
RGD	621368; Atp5b; .
eggNOG	roNOG07745; -; .
HOVERGEN	HBG004307; -; .
InParanoid	P10719; -; .
OrthoDB	EOG4ZCT4C; -; .
PhylomeDB	P10719; -; .
NextBio	622183; -; .
ArrayExpress	P10719; -; .
Genevestigator	P10719; -; .
GermOnline	ENSRNOG00000002840; Rattus norvegicus; .
GO	GO:0000275; C:mitochondrial proton-transporting ATP synthase complex; catalytic core F(1); IDA:RGD
GO	GO:0005524; F:ATP binding; IDA:RGD; .
GO	GO:0005509; F:calcium ion binding; IDA:RGD; .
GO	GO:0046933; F:hydrogen ion transporting ATP synthase activity; rotational mechanism; IEA:InterPro
GO	GO:0008553; F:hydrogen-exporting ATPase activity; phosphorylative mechanism; IEA:InterPro
GO	GO:0030228; F:lipoprotein particle receptor activity; IDA:RGD; .
GO	GO:0006172; P:ADP biosynthetic process; IDA:RGD; .
GO	GO:0015991; P:ATP hydrolysis coupled proton transport; IEA:InterPro; .
GO	GO:0015986; P:ATP synthesis coupled proton transport; IEA:InterPro; .
InterPro	IPR020003; ATPase_a/bsu_AS; .
InterPro	IPR003593; ATPase_AAA+_core; .
InterPro	IPR005722; ATPase_F1-cplx_bsu; .
InterPro	IPR018118; ATPase_F1/A1-cplx_a/bsu_N; .
InterPro	IPR000793; ATPase_F1/V1/A1-cplx_a/bsu_C; .
InterPro	IPR004100; ATPase_F1/V1/A1-cplx_a/bsu_N; .
InterPro	IPR000194; ATPase_F1/V1/A1_a/bsu_nucl-bd; .
InterPro	IPR024034; ATPase_F1_bsu/V1_C; .
Gene3D	G3DSA:1.10.1140.10; G3DSA:1.10.1140.10; 1; .
KO	K02133; -; .
PANTHER	PTHR15184:SF8; ATPase_F1_b; 1; .
Pfam	PF00006; ATP-synt_ab; 1; .
Pfam	PF00306; ATP-synt_ab_C; 1; .
Pfam	PF02874; ATP-synt_ab_N; 1; .
SMART	SM00382; AAA; 1; .
SUPFAM	SSF47917; ATPase_a/b_C; 1; .
SUPFAM	SSF50615; ATPase_a/b_N; 1; .
TIGRFAMs	TIGR01039; AtpD; 1; .
PROSITE	PS00152; ATPASE_ALPHA_BETA; 1; .

World-2DPAGE Repository (search AC)

Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the Expasy web server

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