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World-2DPAGE Repository
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Searching in 'World-2DPAGE Repository [0004]' for entry
matching:
P13084
World-2DPAGE Repository
(0004):
P13084
P13084
General information about the entry
View entry in simple text format
Entry name
NPM_RAT
Primary accession number
P13084
integrated into World-2DPAGE Repository (0004) on
October 13, 2008 (release 1)
2D Annotations were last modified on
May 18, 2011 (version 2)
General Annotations were last modified on
December 22, 2011 (version 2)
Name and origin of the protein
Description
RecName: Full=Nucleophosmin; Short=NPM; AltName: Full=Nucleolar phosphoprotein B23; AltName: Full=Nucleolar protein NO38; AltName: Full=Numatrin;.
Gene name
Name=Npm1
Annotated species
Rattus norvegicus (Rat) [TaxID:
10116
]
Taxonomy
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
References
[1]
MAPPING ON GEL
PubMed=19343716; DOI=
10.1002/pmic.200800664
; [
NCBI
,
EBI
,
Israel
,
Japan
]
Maurya D.K., Sundaram C.S., Bhargava P.
''Proteome profile of the mature rat olfactory bulb''
Proteomics 9(1):2593-2599 (2009)
2D PAGE maps for identified proteins
How to interpret a protein
OB21DSUB
{2-DE gel for Olfactory bulb proteome}
Rattus norvegicus (Rat)
Tissue: Olfactory bulb
map experimental info
OB21DSUB
MAP LOCATIONS:
SPOT 501
:
pI=4.95; Mw=40000
[identification data]
MAPPING (identification):
SPOT
501
:
Peptide mass fingerprinting
[
1
];
Tandem mass spectrometry
[
1
].
Copyright
Data from Dr. Purnima Bhargava, Centre for Cellular and Molecular Biology, India
Cross-references
UniProtKB/Swiss-Prot
P13084; NPM_RAT.
2D PAGE maps for identified proteins
How to interpret a protein map
You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
Warning 1
: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
Warning 2
: the 2D PAGE map is built on demand. This may take some few seconds to be computed.
External data extracted from
UniProtKB/Swiss-Prot
Extracted from
UniProtKB/Swiss-Prot
, release:
2011_12
Entry name
NPM_RAT
Primary accession number
P13084
Secondary accession number(s)
Q63698 Q64269
Sequence was last modified on
January 1, 1990 (version 1)
Annotations were last modified on
December 14, 2011 (version 99)
Name and origin of the protein
Description
RecName: Full=Nucleophosmin; Short=NPM; AltName: Full=Nucleolar phosphoprotein B23; AltName: Full=Nucleolar protein NO38; AltName: Full=Numatrin;
Gene name
Name=Npm1
Encoded on
Name=Npm1
Keywords
Acetylation
;
ADP-ribosylation
;
Alternative splicing
;
Chaperone
;
Complete proteome
;
Cytoplasm
;
Cytoskeleton
;
Direct protein sequencing
;
Disulfide bond
;
DNA-binding
;
Isopeptide bond
;
Nucleus
;
Phosphoprotein
;
Reference proteome
;
RNA-binding
;
Ubl conjugation
.
Copyright
Copyrighted by the UniProt Consortium, see
https://www.uniprot.org/help/license
. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBL
J03969; AAA40796.1
; -; mRNA
EMBL
M37039; AAA41730.1
; -; Genomic_DNA
EMBL
M37035; AAA41730.1
; JOINED; Genomic_DNA
EMBL
M37036; AAA41730.1
; JOINED; Genomic_DNA
EMBL
M37037; AAA41730.1
; JOINED; Genomic_DNA
EMBL
M37038; AAA41730.1
; JOINED; Genomic_DNA
EMBL
M37041; AAA41731.1
; -; Genomic_DNA
EMBL
M37035; AAA41731.1
; JOINED; Genomic_DNA
EMBL
M37036; AAA41731.1
; JOINED; Genomic_DNA
EMBL
M37037; AAA41731.1
; JOINED; Genomic_DNA
EMBL
M37038; AAA41731.1
; JOINED; Genomic_DNA
EMBL
M37040; AAA41731.1
; JOINED; Genomic_DNA
EMBL
M25062; AAA40795.1
; -; Genomic_DNA
EMBL
J04943; AAA40794.1
; -; mRNA
EMBL
J04944; AAA40793.1
; -; Genomic_DNA
EMBL
BC060579; AAH60579.1
; -; mRNA
EMBL
BC088088; AAH88088.1
; -; mRNA
IPI
IPI00197553; -
; .
IPI
IPI00230893; -
; .
PIR
A28939; A28939
; .
PIR
A36089; A36089
; .
PIR
B36089; A34168
; .
RefSeq
NP_037124.1; NM_012992.3
; .
UniGene
Rn.54537; -
; .
ProteinModelPortal
P13084; -
; .
SMR
P13084; 15-118
; 241-292; .
STRING
P13084; -
; .
PhosphoSite
P13084; -
; .
World-2DPAGE
0004:P13084; -
; .
PRIDE
P13084; -
; .
Ensembl
ENSRNOT00000006591; ENSRNOP00000006591
; ENSRNOG00000004616; .
Ensembl
ENSRNOT00000064744; ENSRNOP00000062356
; ENSRNOG00000004616; .
GeneID
25498; -
; .
KEGG
rno:25498; -
; .
UCSC
NM_012992; rat
; .
CTD
4869; -
; .
RGD
3192; Npm1
; .
eggNOG
roNOG11600; -
; .
GeneTree
ENSGT00440000034554; -
; .
HOVERGEN
HBG001860; -
; .
InParanoid
P13084; -
; .
OMA
NCFRTED; -
; .
OrthoDB
EOG4W3SNZ; -
; .
PhylomeDB
P13084; -
; .
NextBio
606897; -
; .
ArrayExpress
P13084; -
; .
Genevestigator
P13084; -
; .
GermOnline
ENSRNOG00000004616; Rattus norvegicus
; .
GO
GO:0005813; C:centrosome
; ISS:UniProtKB; .
GO
GO:0005730; C:nucleolus
; IDA:RGD; .
GO
GO:0005654; C:nucleoplasm
; IEA:UniProtKB-SubCell; .
GO
GO:0003677; F:DNA binding
; IDA:RGD; .
GO
GO:0019899; F:enzyme binding
; IDA:RGD; .
GO
GO:0051059; F:NF-kappaB binding
; ISS:UniProtKB; .
GO
GO:0005547; F:phosphatidylinositol-3
; 4; 5-trisphosphate binding
IPI:RGD
.
GO
GO:0003723; F:RNA binding
; IEA:UniProtKB-KW; .
GO
GO:0051082; F:unfolded protein binding
; ISS:UniProtKB; .
GO
GO:0007569; P:cell aging
; ISS:UniProtKB; .
GO
GO:0007098; P:centrosome cycle
; ISS:UniProtKB; .
GO
GO:0006281; P:DNA repair
; ISS:UniProtKB; .
GO
GO:0008285; P:negative regulation of cell proliferation
; ISS:UniProtKB; .
GO
GO:0043085; P:positive regulation of catalytic activity
; IDA:RGD; .
GO
GO:0045740; P:positive regulation of DNA replication
; IDA:RGD; .
GO
GO:0051260; P:protein homooligomerization
; IDA:RGD; .
GO
GO:0045767; P:regulation of anti-apoptosis
; IMP:RGD; .
GO
GO:0032071; P:regulation of endodeoxyribonuclease activity
; ISS:UniProtKB; .
GO
GO:0060699; P:regulation of endoribonuclease activity
; ISS:UniProtKB; .
InterPro
IPR004301; Nucleoplasmin
; .
InterPro
IPR024057; Nucleoplasmin_core
; .
Gene3D
G3DSA:2.60.120.340; G3DSA:2.60.120.340
; 1; .
KO
K11276; -
; .
PANTHER
PTHR22747; Nucleoplasmin
; 1; .
Pfam
PF03066; Nucleoplasmin
; 1; .
SUPFAM
SSF69203; Nucleoplasmin
; 1; .
World-2DPAGE Repository (search AC)
Database constructed and maintained by
SIB
, using the
Make2D-DB II
package (
ver. 3.10.2
) from the
World-2DPAGE Constellation
of the
Expasy web server