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World-2DPAGE Repository
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Searching in 'World-2DPAGE Repository [0030]' for entry
matching:
P18395
World-2DPAGE Repository
(0030):
P18395
P18395
General information about the entry
View entry in simple text format
Entry name
CSDE1_RAT
Primary accession number
P18395
integrated into World-2DPAGE Repository (0030) on
November 9, 2010 (release 1)
2D Annotations were last modified on
June 21, 2011 (version 2)
General Annotations were last modified on
November 23, 2011 (version 2)
Name and origin of the protein
Description
RecName: Full=Cold shock domain-containing protein E1; AltName: Full=Protein UNR;.
Gene name
Name=Csde1
Synonyms=Unr
Annotated species
Rattus norvegicus (Rat) [TaxID:
10116
]
Taxonomy
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
References
[1]
2D-PAGE GEL CHARACTERIZATION
DOI=
10.1002/pmic.201000006
;
D'Hertog W., Maris M., Thorrez L., Waelkens E., Overbergh L., Mathieu C.
''Two-dimensional gel proteome reference map of INS-1E cells''
Proteomics 11(7):1365-1369 (2011)
2D PAGE maps for identified proteins
How to interpret a protein
RAT_INS1E_4-7
{INS-1E cell line, a model rat cell line for pancreatic beta cells, PH4-7}
Rattus norvegicus (Rat)
map experimental info
RAT_INS1E_4-7
MAP LOCATIONS:
SPOT 278
:
pI=6.26; Mw=93633
[identification data]
SPOT 316
:
pI=6.11; Mw=91584
[identification data]
SPOT 330
:
pI=6.26; Mw=91078
[identification data]
IDENTIFICATION:
SPOT 278: Mascot protein score=84. Number of peptides=4 [
1
]
SPOT 316: Mascot protein score=172. Number of peptides=6 [
1
]; SPOT 330: Mascot protein score=238. Number of peptides=6 [
1
].
MAPPING (identification):
SPOT
278
:
Tandem mass spectrometry
[
1
];
SPOT
316
:
Tandem mass spectrometry
[
1
];
SPOT
330
:
Tandem mass spectrometry
[
1
].
Copyright
Data from Dr. Wannes D'Hertog, Catholic University Leuven, Belgium
Cross-references
UniProtKB/Swiss-Prot
P18395; CSDE1_RAT.
World-2DPAGE Repository
P18395; CSDE1_RAT.
2D PAGE maps for identified proteins
How to interpret a protein map
You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
Warning 1
: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
Warning 2
: the 2D PAGE map is built on demand. This may take some few seconds to be computed.
External data extracted from
UniProtKB/Swiss-Prot
Extracted from
UniProtKB/Swiss-Prot
, release:
2011_11
Entry name
CSDE1_RAT
Primary accession number
P18395
Sequence was last modified on
November 1, 1990 (version 1)
Annotations were last modified on
October 19, 2011 (version 95)
Name and origin of the protein
Description
RecName: Full=Cold shock domain-containing protein E1; AltName: Full=Protein UNR;
Gene name
Name=Csde1
Synonyms=Unr
Encoded on
Name=Csde1; Synonyms=Unr
Keywords
Acetylation
;
Complete proteome
;
Cytoplasm
;
Phosphoprotein
;
Reference proteome
;
Repeat
;
RNA-binding
.
Copyright
Copyrighted by the UniProt Consortium, see
https://www.uniprot.org/help/license
. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBL
X52311; CAA36549.1
; -; mRNA
IPI
IPI00190971; -
; .
PIR
S11210; S11210
; .
RefSeq
NP_446458.1; NM_054006.1
; .
UniGene
Rn.3562; -
; .
ProteinModelPortal
P18395; -
; .
SMR
P18395; 16-90
; 172-259; 345-424
508-582
673-744; .
STRING
P18395; -
; .
PhosphoSite
P18395; -
; .
PRIDE
P18395; -
; .
GeneID
117180; -
; .
KEGG
rno:117180; -
; .
UCSC
NM_054006; rat
; .
CTD
7812; -
; .
RGD
619726; Csde1
; .
eggNOG
roNOG14308; -
; .
GeneTree
ENSGT00390000016950; -
; .
HOVERGEN
HBG013042; -
; .
NextBio
620034; -
; .
Genevestigator
P18395; -
; .
GO
GO:0005737; C:cytoplasm
; IEA:UniProtKB-SubCell; .
GO
GO:0003677; F:DNA binding
; IEA:InterPro; .
GO
GO:0003723; F:RNA binding
; IEA:UniProtKB-KW; .
GO
GO:0006355; P:regulation of transcription
; DNA-dependent; IEA:InterPro
InterPro
IPR019844; Cold-shock_CS
; .
InterPro
IPR011129; Cold_shock_prot
; .
InterPro
IPR002059; CSP_DNA-bd
; .
InterPro
IPR012340; NA-bd_OB-fold
; .
InterPro
IPR016027; NA-bd_OB-fold-like
; .
InterPro
IPR024642; SUZ-C
; .
Gene3D
G3DSA:2.40.50.140; OB_NA_bd_sub
; 5; .
Pfam
PF00313; CSD
; 5; .
Pfam
PF12901; SUZ-C
; 1; .
SMART
SM00357; CSP
; 5; .
SUPFAM
SSF50249; Nucleic_acid_OB
; 5; .
PROSITE
PS00352; COLD_SHOCK
; 4; .
World-2DPAGE Repository (search AC)
Database constructed and maintained by
SIB
, using the
Make2D-DB II
package (
ver. 3.10.2
) from the
World-2DPAGE Constellation
of the
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