World-2DPAGE Repository

Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.

References

[1]	MAPPING ON GEL PubMed=19343716; DOI=10.1002/pmic.200800664; [NCBI, EBI, Israel, Japan] Maurya D.K., Sundaram C.S., Bhargava P. ''Proteome profile of the mature rat olfactory bulb'' Proteomics 9(1):2593-2599 (2009)

2D PAGE maps for identified proteins

How to interpret a protein

OB21DSUB {2-DE gel for Olfactory bulb proteome}
Rattus norvegicus (Rat)
Tissue: Olfactory bulb

map experimental info

OB21DSUB

MAP LOCATIONS:

SPOT 126:

pI=6.38; Mw=95000

[identification data]

SPOT 127:

pI=6.34; Mw=95000

[identification data]

SPOT 129:

pI=6.27; Mw=95000

[identification data]

MAPPING (identification):

SPOT 126: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1];
SPOT 127: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1];
SPOT 129: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1].

Copyright

Data from Dr. Purnima Bhargava, Centre for Cellular and Molecular Biology, India

Cross-references

UniProtKB/Swiss-Prot

P21575; DYN1_RAT.

2D PAGE maps for identified proteins
How to interpret a protein map You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw. Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly. Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.

External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_12
Entry name	DYN1_RAT
Primary accession number	P21575
Sequence was last modified on	June 10, 2008 (version 2)
Annotations were last modified on	November 16, 2011 (version 116)
Name and origin of the protein
Description	RecName: Full=Dynamin-1; EC=3.6.5.5; AltName: Full=B-dynamin; AltName: Full=D100; AltName: Full=Dynamin, brain;
Gene name	Name=Dnm1 Synonyms=Dnm
Encoded on	Name=Dnm1; Synonyms=Dnm
Keywords	3D-structure; Alternative splicing; Complete proteome; Cytoplasm; Cytoskeleton; Direct protein sequencing; Endocytosis; Golgi apparatus; GTP-binding; Hydrolase; Microtubule; Motor protein; Nucleotide-binding; Phosphoprotein; Reference proteome.
Copyright
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBL	X54531; CAA38397.1; -; mRNA
EMBL	CO398357; -; NOT_ANNOTATED_CDS; mRNA
EMBL	CB583951; -; NOT_ANNOTATED_CDS; mRNA
EMBL	CB708564; -; NOT_ANNOTATED_CDS; mRNA
IPI	IPI00558839; -; .
IPI	IPI00782657; -; .
IPI	IPI00896118; -; .
IPI	IPI00896147; -; .
IPI	IPI00896174; -; .
IPI	IPI00896199; -; .
IPI	IPI00896219; -; .
IPI	IPI00952286; -; .
PIR	S11508; S11508; .
RefSeq	NP_542420.1; NM_080689.4; .
UniGene	Rn.10354; -; .
PDB	2AKA; X-ray; 1.90 A; B=6-304
PDB	3ZVR; X-ray; 3.10 A; A=1-752
PDBsum	2AKA; -; .
PDBsum	3ZVR; -; .
ProteinModelPortal	P21575; -; .
SMR	P21575; 6-304; 518-630; .
IntAct	P21575; 6; .
MINT	MINT-95899; -; .
STRING	P21575; -; .
PhosphoSite	P21575; -; .
World-2DPAGE	0004:P21575; -; .
PRIDE	P21575; -; .
Ensembl	ENSRNOT00000042762; ENSRNOP00000047444; ENSRNOG00000033835; .
Ensembl	ENSRNOT00000060325; ENSRNOP00000057073; ENSRNOG00000033835; .
Ensembl	ENSRNOT00000068349; ENSRNOP00000061825; ENSRNOG00000033835; .
GeneID	140694; -; .
KEGG	rno:140694; -; .
CTD	1759; -; .
RGD	71096; Dnm1; .
eggNOG	roNOG10695; -; .
GeneTree	ENSGT00600000084144; -; .
HOVERGEN	HBG107833; -; .
BRENDA	3.6.5.5; 5301; .
Reactome	REACT_111984; Signal Transduction; .
NextBio	620679; -; .
PMAP-CutDB	P21575; -; .
ArrayExpress	P21575; -; .
Genevestigator	P21575; -; .
GermOnline	ENSRNOG00000033835; Rattus norvegicus; .
GO	GO:0005794; C:Golgi apparatus; IEA:UniProtKB-SubCell; .
GO	GO:0005874; C:microtubule; IEA:UniProtKB-KW; .
GO	GO:0005886; C:plasma membrane; TAS:Reactome; .
GO	GO:0005525; F:GTP binding; IEA:UniProtKB-KW; .
GO	GO:0003924; F:GTPase activity; IEA:InterPro; .
GO	GO:0042802; F:identical protein binding; TAS:RGD; .
GO	GO:0008022; F:protein C-terminus binding; IPI:RGD; .
GO	GO:0032403; F:protein complex binding; IDA:RGD; .
GO	GO:0031623; P:receptor internalization; IMP:UniProtKB; .
InterPro	IPR022812; Dynamin; .
InterPro	IPR000375; Dynamin_central; .
InterPro	IPR001401; Dynamin_GTPase; .
InterPro	IPR019762; Dynamin_GTPase_CS; .
InterPro	IPR003130; GED; .
InterPro	IPR020850; GTPase_effector_domain_GED; .
InterPro	IPR011993; PH_type; .
InterPro	IPR001849; Pleckstrin_homology; .
Gene3D	G3DSA:2.30.29.30; PH_type; 2; .
KO	K01528; -; .
Pfam	PF01031; Dynamin_M; 1; .
Pfam	PF00350; Dynamin_N; 1; .
Pfam	PF02212; GED; 1; .
Pfam	PF00169; PH; 1; .
PRINTS	PR00195; DYNAMIN; .
SMART	SM00053; DYNc; 1; .
SMART	SM00302; GED; 1; .
SMART	SM00233; PH; 1; .
PROSITE	PS00410; DYNAMIN; 1; .
PROSITE	PS51388; GED; 1; .
PROSITE	PS50003; PH_DOMAIN; 1; .

World-2DPAGE Repository (search AC)

Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the Expasy web server

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