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Searching in 'World-2DPAGE Repository [0022]' for entry matching: P31000




World-2DPAGE Repository (0022):  P31000

P31000


General information about the entry
View entry in simple text format
Entry nameVIME_RAT
Primary accession numberP31000
integrated into World-2DPAGE Repository (0022) on May 7, 2010 (release 1)
2D Annotations were last modified onJune 22, 2011 (version 2)
General Annotations were last modified on November 24, 2011 (version 2)
Name and origin of the protein
DescriptionRecName: Full=Vimentin;.
Gene nameName=Vim
Annotated speciesRattus [TaxID: 10114]
TaxonomyEukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae.
References
[1]   2D-PAGE GEL CHARACTERIZATION
DOI=10.1002/pmic.201000593;
Burniston J.G., Kenyani J., Wastling J.M., Burant C.F., Qi N.R., Koch L.G., Britton S.L.
''Proteomic analysis reveals perturbed energy metabolism and elevated oxidative stress in hearts of rats with inborn low aerobic capacity''
Proteomics 11(16):3369-3379 (2011)
2D PAGE maps for identified proteins
How to interpret a protein

HCR_LCR_HEART {HCR LCR Cardiac Map}
Rattus
Tissue: Heart
HCR_LCR_HEART
  map experimental info 		 
HCR_LCR_HEART

MAP LOCATIONS:
pI=5.06; Mw=53757  [identification data]

IDENTIFICATION: SPOT 15: SeqCov=24%. Peptides MS=9/20. Mascot PMF Score=162 [1].
MAPPING (identification):
SPOT 15: Peptide mass fingerprinting [1].

Copyright
Data from Dr. Jatin Burniston, Liverpool John Moores University, UK
Cross-references
UniProtKB/Swiss-ProtP31000; VIME_RAT.



2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_11
Entry nameVIME_RAT
Primary accession numberP31000
Sequence was last modified on January 23, 2007 (version 2)
Annotations were last modified on November 16, 2011 (version 104)
Name and origin of the protein
DescriptionRecName: Full=Vimentin;
Gene nameName=Vim
Encoded onName=Vim
KeywordsAcetylation; Coiled coil; Complete proteome; Cytoplasm; Direct protein sequencing; Intermediate filament; Nucleus; Phosphoprotein; Reference proteome.
Copyright
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBLX62952; CAA44722.1; -; mRNA
EMBLBC061847; AAH61847.1; -; mRNA
EMBLM84481; AAA42339.1; -; mRNA
IPIIPI00230941; -; .
PIRS22119; S22119; .
RefSeqNP_112402.1; NM_031140.1; .
UniGeneRn.2710; -; .
ProteinModelPortalP31000; -; .
SMRP31000; 101-138; 328-406; .
IntActP31000; 5; .
STRINGP31000; -; .
PhosphoSiteP31000; -; .
PRIDEP31000; -; .
GeneID81818; -; .
KEGGrno:81818; -; .
UCSCNM_031140; rat; .
CTD7431; -; .
RGD621646; Vim; .
eggNOGroNOG09368; -; .
GeneTreeENSGT00560000076592; -; .
HOVERGENHBG013015; -; .
InParanoidP31000; -; .
OrthoDBEOG4GHZPD; -; .
NextBio615731; -; .
ArrayExpressP31000; -; .
GenevestigatorP31000; -; .
GermOnlineENSRNOG00000018087; Rattus norvegicus; .
GOGO:0030424; C:axon; IDA:RGD; .
GOGO:0016363; C:nuclear matrix; IEA:UniProtKB-SubCell; .
GOGO:0045098; C:type III intermediate filament; TAS:RGD; .
GOGO:0019901; F:protein kinase binding; IPI:RGD; .
GOGO:0005200; F:structural constituent of cytoskeleton; ISS:UniProtKB; .
InterProIPR016044; F; .
InterProIPR001664; IF; .
InterProIPR006821; Intermed_filament_DNA-bd; .
InterProIPR018039; Intermediate_filament_CS; .
KOK07606; -; .
PANTHERPTHR23239; IF; 1; .
PfamPF00038; Filament; 1; .
PfamPF04732; Filament_head; 1; .
PROSITEPS00226; IF; 1; .


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Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the ExPASy web server