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World-2DPAGE Repository
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Searching in 'World-2DPAGE Repository [0022]' for entry
matching:
P31000
World-2DPAGE Repository
(0022):
P31000
P31000
General information about the entry
View entry in simple text format
Entry name
VIME_RAT
Primary accession number
P31000
integrated into World-2DPAGE Repository (0022) on
May 7, 2010 (release 1)
2D Annotations were last modified on
June 22, 2011 (version 2)
General Annotations were last modified on
November 24, 2011 (version 2)
Name and origin of the protein
Description
RecName: Full=Vimentin;.
Gene name
Name=Vim
Annotated species
Rattus [TaxID:
10114
]
Taxonomy
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae.
References
[1]
2D-PAGE GEL CHARACTERIZATION
DOI=
10.1002/pmic.201000593
;
Burniston J.G., Kenyani J., Wastling J.M., Burant C.F., Qi N.R., Koch L.G., Britton S.L.
''Proteomic analysis reveals perturbed energy metabolism and elevated oxidative stress in hearts of rats with inborn low aerobic capacity''
Proteomics 11(16):3369-3379 (2011)
2D PAGE maps for identified proteins
How to interpret a protein
HCR_LCR_HEART
{HCR LCR Cardiac Map}
Rattus
Tissue: Heart
map experimental info
HCR_LCR_HEART
MAP LOCATIONS:
SPOT 15
:
pI=5.06; Mw=53757
[identification data]
IDENTIFICATION:
SPOT 15: SeqCov=24%. Peptides MS=9/20. Mascot PMF Score=162 [
1
].
MAPPING (identification):
SPOT
15
:
Peptide mass fingerprinting
[
1
].
Copyright
Data from Dr. Jatin Burniston, Liverpool John Moores University, UK
Cross-references
UniProtKB/Swiss-Prot
P31000; VIME_RAT.
2D PAGE maps for identified proteins
How to interpret a protein map
You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
Warning 1
: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
Warning 2
: the 2D PAGE map is built on demand. This may take some few seconds to be computed.
External data extracted from
UniProtKB/Swiss-Prot
Extracted from
UniProtKB/Swiss-Prot
, release:
2011_11
Entry name
VIME_RAT
Primary accession number
P31000
Sequence was last modified on
January 23, 2007 (version 2)
Annotations were last modified on
November 16, 2011 (version 104)
Name and origin of the protein
Description
RecName: Full=Vimentin;
Gene name
Name=Vim
Encoded on
Name=Vim
Keywords
Acetylation
;
Coiled coil
;
Complete proteome
;
Cytoplasm
;
Direct protein sequencing
;
Intermediate filament
;
Nucleus
;
Phosphoprotein
;
Reference proteome
.
Copyright
Copyrighted by the UniProt Consortium, see
https://www.uniprot.org/help/license
. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBL
X62952; CAA44722.1
; -; mRNA
EMBL
BC061847; AAH61847.1
; -; mRNA
EMBL
M84481; AAA42339.1
; -; mRNA
IPI
IPI00230941; -
; .
PIR
S22119; S22119
; .
RefSeq
NP_112402.1; NM_031140.1
; .
UniGene
Rn.2710; -
; .
ProteinModelPortal
P31000; -
; .
SMR
P31000; 101-138
; 328-406; .
IntAct
P31000; 5
; .
STRING
P31000; -
; .
PhosphoSite
P31000; -
; .
PRIDE
P31000; -
; .
GeneID
81818; -
; .
KEGG
rno:81818; -
; .
UCSC
NM_031140; rat
; .
CTD
7431; -
; .
RGD
621646; Vim
; .
eggNOG
roNOG09368; -
; .
GeneTree
ENSGT00560000076592; -
; .
HOVERGEN
HBG013015; -
; .
InParanoid
P31000; -
; .
OrthoDB
EOG4GHZPD; -
; .
NextBio
615731; -
; .
ArrayExpress
P31000; -
; .
Genevestigator
P31000; -
; .
GermOnline
ENSRNOG00000018087; Rattus norvegicus
; .
GO
GO:0030424; C:axon
; IDA:RGD; .
GO
GO:0016363; C:nuclear matrix
; IEA:UniProtKB-SubCell; .
GO
GO:0045098; C:type III intermediate filament
; TAS:RGD; .
GO
GO:0019901; F:protein kinase binding
; IPI:RGD; .
GO
GO:0005200; F:structural constituent of cytoskeleton
; ISS:UniProtKB; .
InterPro
IPR016044; F
; .
InterPro
IPR001664; IF
; .
InterPro
IPR006821; Intermed_filament_DNA-bd
; .
InterPro
IPR018039; Intermediate_filament_CS
; .
KO
K07606; -
; .
PANTHER
PTHR23239; IF
; 1; .
Pfam
PF00038; Filament
; 1; .
Pfam
PF04732; Filament_head
; 1; .
PROSITE
PS00226; IF
; 1; .
World-2DPAGE Repository (search AC)
Database constructed and maintained by
SIB
, using the
Make2D-DB II
package (
ver. 3.10.2
) from the
World-2DPAGE Constellation
of the
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