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Searching in 'World-2DPAGE Repository [0022]' for entry matching: P52944




World-2DPAGE Repository (0022):  P52944

P52944


General information about the entry
View entry in simple text format
Entry namePDLI1_RAT
Primary accession numberP52944
integrated into World-2DPAGE Repository (0022) on May 7, 2010 (release 1)
2D Annotations were last modified onJune 22, 2011 (version 2)
General Annotations were last modified on November 24, 2011 (version 2)
Name and origin of the protein
DescriptionRecName: Full=PDZ and LIM domain protein 1; AltName: Full=C-terminal LIM domain protein 1; AltName: Full=Elfin; AltName: Full=LIM domain protein CLP-36;.
Gene nameName=Pdlim1
Synonyms=Clim1, Clp36
Annotated speciesRattus [TaxID: 10114]
TaxonomyEukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae.
References
[1]   2D-PAGE GEL CHARACTERIZATION
DOI=10.1002/pmic.201000593;
Burniston J.G., Kenyani J., Wastling J.M., Burant C.F., Qi N.R., Koch L.G., Britton S.L.
''Proteomic analysis reveals perturbed energy metabolism and elevated oxidative stress in hearts of rats with inborn low aerobic capacity''
Proteomics 11(16):3369-3379 (2011)
2D PAGE maps for identified proteins
How to interpret a protein

HCR_LCR_HEART {HCR LCR Cardiac Map}
Rattus
Tissue: Heart
HCR_LCR_HEART
  map experimental info 		 
HCR_LCR_HEART

MAP LOCATIONS:
pI=6.79; Mw=36018  [identification data]
pI=6.79; Mw=36018  [identification data]

IDENTIFICATION: SPOT 64: SeqCov=32.4%. Peptides MS=9/20. Mascot PMF Score=78 [1]
SPOT 69: SeqCov=22.6%. Peptides MS=6/20. Mascot PMF Score=57 [1].
PEPTIDE EVIDENCE: SPOT 64: 23-DFEQPLAISR-32 (40) / 88-IWSPLVTEEGKR-99 (23) [1]
SPOT 69: 23-DFEQPLAISR-32 (54) / 88-IWSPLVTEEGKR-99 (57) [1].
MAPPING (identification):
SPOT 64: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1];
SPOT 69: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1].

Copyright
Data from Dr. Jatin Burniston, Liverpool John Moores University, UK
Cross-references
UniProtKB/Swiss-ProtP52944; PDLI1_RAT.



2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_11
Entry namePDLI1_RAT
Primary accession numberP52944
Secondary accession number(s) Q6IN45
Sequence was last modified on January 23, 2007 (version 4)
Annotations were last modified on September 21, 2011 (version 89)
Name and origin of the protein
DescriptionRecName: Full=PDZ and LIM domain protein 1; AltName: Full=C-terminal LIM domain protein 1; AltName: Full=Elfin; AltName: Full=LIM domain protein CLP-36;
Gene nameName=Pdlim1
Synonyms=Clim1, Clp36
Encoded onName=Pdlim1; Synonyms=Clim1, Clp36
KeywordsAcetylation; Complete proteome; Cytoplasm; Cytoskeleton; LIM domain; Metal-binding; Phosphoprotein; Reference proteome; Zinc.
Copyright
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBLU23769; AAA92046.1; -; mRNA
EMBLBC072465; AAH72465.1; -; mRNA
IPIIPI00211206; -; .
PIRJC4385; JC4385; .
RefSeqNP_059061.1; NM_017365.1; .
UniGeneRn.11170; -; .
ProteinModelPortalP52944; -; .
SMRP52944; 1-87; 249-316; .
IntActP52944; 1; .
STRINGP52944; -; .
PhosphoSiteP52944; -; .
PRIDEP52944; -; .
EnsemblENSRNOT00000022000; ENSRNOP00000022000; ENSRNOG00000016166; .
GeneID54133; -; .
KEGGrno:54133; -; .
UCSCNM_017365; rat; .
CTD9124; -; .
RGD68324; Pdlim1; .
eggNOGroNOG04610; -; .
GeneTreeENSGT00590000082980; -; .
HOVERGENHBG061371; -; .
InParanoidP52944; -; .
OMAEVVTVFP; -; .
OrthoDBEOG4DV5MH; -; .
PhylomeDBP52944; -; .
NextBio610626; -; .
ArrayExpressP52944; -; .
GenevestigatorP52944; -; .
GermOnlineENSRNOG00000016166; Rattus norvegicus; .
GOGO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell; .
GOGO:0005856; C:cytoskeleton; IEA:UniProtKB-SubCell; .
GOGO:0008270; F:zinc ion binding; IEA:InterPro; .
GOGO:0001666; P:response to hypoxia; IEP:RGD; .
InterProIPR001478; PDZ/DHR/GLGF; .
InterProIPR001781; Znf_LIM; .
Gene3DG3DSA:2.10.110.10; Znf_LIM; 1; .
PfamPF00412; LIM; 1; .
PfamPF00595; PDZ; 1; .
SMARTSM00132; LIM; 1; .
SMARTSM00228; PDZ; 1; .
SUPFAMSSF50156; PDZ; 1; .
PROSITEPS00478; LIM_DOMAIN_1; 1; .
PROSITEPS50023; LIM_DOMAIN_2; 1; .
PROSITEPS50106; PDZ; 1; .


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Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the ExPASy web server