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World-2DPAGE Repository
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Searching in 'World-2DPAGE Repository [0022]' for entry
matching:
P52944
World-2DPAGE Repository
(0022):
P52944
P52944
General information about the entry
View entry in simple text format
Entry name
PDLI1_RAT
Primary accession number
P52944
integrated into World-2DPAGE Repository (0022) on
May 7, 2010 (release 1)
2D Annotations were last modified on
June 22, 2011 (version 2)
General Annotations were last modified on
November 24, 2011 (version 2)
Name and origin of the protein
Description
RecName: Full=PDZ and LIM domain protein 1; AltName: Full=C-terminal LIM domain protein 1; AltName: Full=Elfin; AltName: Full=LIM domain protein CLP-36;.
Gene name
Name=Pdlim1
Synonyms=Clim1, Clp36
Annotated species
Rattus [TaxID:
10114
]
Taxonomy
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae.
References
[1]
2D-PAGE GEL CHARACTERIZATION
DOI=
10.1002/pmic.201000593
;
Burniston J.G., Kenyani J., Wastling J.M., Burant C.F., Qi N.R., Koch L.G., Britton S.L.
''Proteomic analysis reveals perturbed energy metabolism and elevated oxidative stress in hearts of rats with inborn low aerobic capacity''
Proteomics 11(16):3369-3379 (2011)
2D PAGE maps for identified proteins
How to interpret a protein
HCR_LCR_HEART
{HCR LCR Cardiac Map}
Rattus
Tissue: Heart
map experimental info
HCR_LCR_HEART
MAP LOCATIONS:
SPOT 64
:
pI=6.79; Mw=36018
[identification data]
SPOT 69
:
pI=6.79; Mw=36018
[identification data]
IDENTIFICATION:
SPOT 64: SeqCov=32.4%. Peptides MS=9/20. Mascot PMF Score=78 [
1
]
SPOT 69: SeqCov=22.6%. Peptides MS=6/20. Mascot PMF Score=57 [
1
].
PEPTIDE EVIDENCE:
SPOT 64: 23-DFEQPLAISR-32 (40) / 88-IWSPLVTEEGKR-99 (23) [
1
]
SPOT 69: 23-DFEQPLAISR-32 (54) / 88-IWSPLVTEEGKR-99 (57) [
1
].
MAPPING (identification):
SPOT
64
:
Peptide mass fingerprinting
[
1
];
Tandem mass spectrometry
[
1
];
SPOT
69
:
Peptide mass fingerprinting
[
1
];
Tandem mass spectrometry
[
1
].
Copyright
Data from Dr. Jatin Burniston, Liverpool John Moores University, UK
Cross-references
UniProtKB/Swiss-Prot
P52944; PDLI1_RAT.
2D PAGE maps for identified proteins
How to interpret a protein map
You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
Warning 1
: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
Warning 2
: the 2D PAGE map is built on demand. This may take some few seconds to be computed.
External data extracted from
UniProtKB/Swiss-Prot
Extracted from
UniProtKB/Swiss-Prot
, release:
2011_11
Entry name
PDLI1_RAT
Primary accession number
P52944
Secondary accession number(s)
Q6IN45
Sequence was last modified on
January 23, 2007 (version 4)
Annotations were last modified on
September 21, 2011 (version 89)
Name and origin of the protein
Description
RecName: Full=PDZ and LIM domain protein 1; AltName: Full=C-terminal LIM domain protein 1; AltName: Full=Elfin; AltName: Full=LIM domain protein CLP-36;
Gene name
Name=Pdlim1
Synonyms=Clim1, Clp36
Encoded on
Name=Pdlim1; Synonyms=Clim1, Clp36
Keywords
Acetylation
;
Complete proteome
;
Cytoplasm
;
Cytoskeleton
;
LIM domain
;
Metal-binding
;
Phosphoprotein
;
Reference proteome
;
Zinc
.
Copyright
Copyrighted by the UniProt Consortium, see
https://www.uniprot.org/help/license
. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBL
U23769; AAA92046.1
; -; mRNA
EMBL
BC072465; AAH72465.1
; -; mRNA
IPI
IPI00211206; -
; .
PIR
JC4385; JC4385
; .
RefSeq
NP_059061.1; NM_017365.1
; .
UniGene
Rn.11170; -
; .
ProteinModelPortal
P52944; -
; .
SMR
P52944; 1-87
; 249-316; .
IntAct
P52944; 1
; .
STRING
P52944; -
; .
PhosphoSite
P52944; -
; .
PRIDE
P52944; -
; .
Ensembl
ENSRNOT00000022000; ENSRNOP00000022000
; ENSRNOG00000016166; .
GeneID
54133; -
; .
KEGG
rno:54133; -
; .
UCSC
NM_017365; rat
; .
CTD
9124; -
; .
RGD
68324; Pdlim1
; .
eggNOG
roNOG04610; -
; .
GeneTree
ENSGT00590000082980; -
; .
HOVERGEN
HBG061371; -
; .
InParanoid
P52944; -
; .
OMA
EVVTVFP; -
; .
OrthoDB
EOG4DV5MH; -
; .
PhylomeDB
P52944; -
; .
NextBio
610626; -
; .
ArrayExpress
P52944; -
; .
Genevestigator
P52944; -
; .
GermOnline
ENSRNOG00000016166; Rattus norvegicus
; .
GO
GO:0005737; C:cytoplasm
; IEA:UniProtKB-SubCell; .
GO
GO:0005856; C:cytoskeleton
; IEA:UniProtKB-SubCell; .
GO
GO:0008270; F:zinc ion binding
; IEA:InterPro; .
GO
GO:0001666; P:response to hypoxia
; IEP:RGD; .
InterPro
IPR001478; PDZ/DHR/GLGF
; .
InterPro
IPR001781; Znf_LIM
; .
Gene3D
G3DSA:2.10.110.10; Znf_LIM
; 1; .
Pfam
PF00412; LIM
; 1; .
Pfam
PF00595; PDZ
; 1; .
SMART
SM00132; LIM
; 1; .
SMART
SM00228; PDZ
; 1; .
SUPFAM
SSF50156; PDZ
; 1; .
PROSITE
PS00478; LIM_DOMAIN_1
; 1; .
PROSITE
PS50023; LIM_DOMAIN_2
; 1; .
PROSITE
PS50106; PDZ
; 1; .
World-2DPAGE Repository (search AC)
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