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World-2DPAGE Repository  Search by  [accession number]  [description, ID or gene]  [author names]  [spot ID / serial number]  [identification methods]  [pI / Mw range]  [combined fields]  Maps  [experimental info]  [protein list]  [graphical interface]      Databases 0001 0002 0003 0004 0005 0006 0007 0008 0009 0010 0011 0012 0014 0017 0018 0019 0020 0021 0022 0023 0024 0026 0027 0029 0030 0031 0032 0034 0035 0036 0037 0038 0039 0040 0042 0043 0044 0046 0047 0050 0051 0053 0054 0056 0059 0061 0062 0063 0066 0068 0069 0076 0077 0080 0084 0085 0088 use 'Ctrl' to select several databases Select Remote Interfaces [All Interfaces] SWISS-2DPAGE World-2DPAGE Portal Exclude local DBs has only effect if a remote interface is selected

Searching in 'World-2DPAGE Repository [0022]' for entry matching: P52944 World-2DPAGE Repository (0022):  P52944 P52944 General information about the entry View entry in simple text format Entry name PDLI1_RAT Primary accession number P52944 integrated into World-2DPAGE Repository (0022) on  May 7, 2010 (release 1) 2D Annotations were last modified on June 22, 2011 (version 2) General Annotations were last modified on  November 24, 2011 (version 2) Name and origin of the protein Description RecName: Full=PDZ and LIM domain protein 1; AltName: Full=C-terminal LIM domain protein 1; AltName: Full=Elfin; AltName: Full=LIM domain protein CLP-36;. Gene name Name=Pdlim1 Synonyms=Clim1, Clp36 Annotated species Rattus [TaxID: 10114] Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae. References [1]   2D-PAGE GEL CHARACTERIZATION DOI=10.1002/pmic.201000593; Burniston J.G., Kenyani J., Wastling J.M., Burant C.F., Qi N.R., Koch L.G., Britton S.L. ''Proteomic analysis reveals perturbed energy metabolism and elevated oxidative stress in hearts of rats with inborn low aerobic capacity'' Proteomics 11(16):3369-3379 (2011) 2D PAGE maps for identified proteins How to interpret a protein HCR_LCR_HEART {HCR LCR Cardiac Map} Rattus Tissue: Heart   map experimental info   HCR_LCR_HEART MAP LOCATIONS: SPOT 64: pI=6.79; Mw=36018   [identification data] SPOT 69: pI=6.79; Mw=36018   [identification data] IDENTIFICATION: SPOT 64: SeqCov=32.4%. Peptides MS=9/20. Mascot PMF Score=78 [1] SPOT 69: SeqCov=22.6%. Peptides MS=6/20. Mascot PMF Score=57 [1]. PEPTIDE EVIDENCE: SPOT 64: 23-DFEQPLAISR-32 (40) / 88-IWSPLVTEEGKR-99 (23) [1] SPOT 69: 23-DFEQPLAISR-32 (54) / 88-IWSPLVTEEGKR-99 (57) [1]. MAPPING (identification): SPOT 64: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1]; SPOT 69: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1]. Copyright Data from Dr. Jatin Burniston, Liverpool John Moores University, UK Cross-references UniProtKB/Swiss-Prot P52944; PDLI1_RAT. 2D PAGE maps for identified proteins How to interpret a protein map You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw. Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly. Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed. External data extracted from UniProtKB/Swiss-Prot Extracted from UniProtKB/Swiss-Prot, release: 2011_11 Entry name PDLI1_RAT Primary accession number P52944 Secondary accession number(s) Q6IN45 Sequence was last modified on  January 23, 2007 (version 4) Annotations were last modified on  September 21, 2011 (version 89) Name and origin of the protein Description RecName: Full=PDZ and LIM domain protein 1; AltName: Full=C-terminal LIM domain protein 1; AltName: Full=Elfin; AltName: Full=LIM domain protein CLP-36; Gene name Name=Pdlim1 Synonyms=Clim1, Clp36 Encoded on Name=Pdlim1; Synonyms=Clim1, Clp36 Keywords Acetylation; Complete proteome; Cytoplasm; Cytoskeleton; LIM domain; Metal-binding; Phosphoprotein; Reference proteome; Zinc. Copyright Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License Cross-references EMBL U23769; AAA92046.1; -; mRNA EMBL BC072465; AAH72465.1; -; mRNA IPI IPI00211206; -; . PIR JC4385; JC4385; . RefSeq NP_059061.1; NM_017365.1; . UniGene Rn.11170; -; . ProteinModelPortal P52944; -; . SMR P52944; 1-87; 249-316; . IntAct P52944; 1; . STRING P52944; -; . PhosphoSite P52944; -; . PRIDE P52944; -; . Ensembl ENSRNOT00000022000; ENSRNOP00000022000; ENSRNOG00000016166; . GeneID 54133; -; . KEGG rno:54133; -; . UCSC NM_017365; rat; . CTD 9124; -; . RGD 68324; Pdlim1; . eggNOG roNOG04610; -; . GeneTree ENSGT00590000082980; -; . HOVERGEN HBG061371; -; . InParanoid P52944; -; . OMA EVVTVFP; -; . OrthoDB EOG4DV5MH; -; . PhylomeDB P52944; -; . NextBio 610626; -; . ArrayExpress P52944; -; . Genevestigator P52944; -; . GermOnline ENSRNOG00000016166; Rattus norvegicus; . GO GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell; . GO GO:0005856; C:cytoskeleton; IEA:UniProtKB-SubCell; . GO GO:0008270; F:zinc ion binding; IEA:InterPro; . GO GO:0001666; P:response to hypoxia; IEP:RGD; . InterPro IPR001478; PDZ/DHR/GLGF; . InterPro IPR001781; Znf_LIM; . Gene3D G3DSA:2.10.110.10; Znf_LIM; 1; . Pfam PF00412; LIM; 1; . Pfam PF00595; PDZ; 1; . SMART SM00132; LIM; 1; . SMART SM00228; PDZ; 1; . SUPFAM SSF50156; PDZ; 1; . PROSITE PS00478; LIM_DOMAIN_1; 1; . PROSITE PS50023; LIM_DOMAIN_2; 1; . PROSITE PS50106; PDZ; 1; . World-2DPAGE Repository (search AC)