World-2DPAGE Home
Home  |  Contact
Due to maintenance work, this service and ftp://ftp.expasy.org will be unavailable from Tuesday August 23rd 18:00 until Wednesday August 24th 08:00 CEST. Apologies for the inconvenience.


World-2DPAGE Repository 
Search by  [accession number] *
[description, ID or gene] 
[author names] 
[spot ID / serial number] 
[identification methods] 
[pI / Mw range] 
[combined fields] 

Maps  [experimental info] 
[protein list] 
[graphical interface]

     Databases

use 'Ctrl' to select several
databases


Select Remote Interfaces
[All Interfaces]
SWISS-2DPAGE
World-2DPAGE Portal

Exclude local DBs
has only effect if a remote
interface is selected
     
Searching in 'World-2DPAGE Repository [0022]' for entry matching: PCCA_RAT




World-2DPAGE Repository (0022):  PCCA_RAT


PCCA_RAT


General information about the entry
View entry in simple text format
Entry namePCCA_RAT
Primary accession numberP14882
integrated into World-2DPAGE Repository (0022) on May 7, 2010 (release 1)
2D Annotations were last modified onJune 22, 2011 (version 2)
General Annotations were last modified on November 24, 2011 (version 2)
Name and origin of the protein
DescriptionRecName: Full=Propionyl-CoA carboxylase alpha chain, mitochondrial; Short=PCCase subunit alpha; EC=6.4.1.3; AltName: Full=Propanoyl-CoA:carbon dioxide ligase subunit alpha; Flags: Precursor;.
Gene nameName=Pcca
Annotated speciesRattus [TaxID: 10114]
TaxonomyEukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae.
References
[1]   2D-PAGE GEL CHARACTERIZATION
DOI=10.1002/pmic.201000593;
Burniston J.G., Kenyani J., Wastling J.M., Burant C.F., Qi N.R., Koch L.G., Britton S.L.
''Proteomic analysis reveals perturbed energy metabolism and elevated oxidative stress in hearts of rats with inborn low aerobic capacity''
Proteomics 11(16):3369-3379 (2011)
2D PAGE maps for identified proteins
How to interpret a protein

HCR_LCR_HEART {HCR LCR Cardiac Map}
Rattus
Tissue: Heart
HCR_LCR_HEART
  map experimental info
 
HCR_LCR_HEART

MAP LOCATIONS:
pI=6.33; Mw=78289  [identification data]
pI=6.33; Mw=78289  [identification data]
pI=6.33; Mw=78289  [identification data]

IDENTIFICATION: SPOT 22: SeqCov=14.3%. Peptides MS=8/20. Mascot PMF Score=44 [1]
SPOT 23: SeqCov=27.4%. Peptides MS=17/20. Mascot PMF Score=154 [1]; SPOT 165: SeqCov=25%. Peptides MS=18/20. Mascot PMF Score=174 [1].
PEPTIDE EVIDENCE: SPOT 22: 393-LSQYQEPIHLPGVR-406 (54) [1].
MAPPING (identification):
SPOT 22: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1];
SPOT 23: Peptide mass fingerprinting [1];
SPOT 165: Peptide mass fingerprinting [1].

Copyright
Data from Dr. Jatin Burniston, Liverpool John Moores University, UK
Cross-references
UniProtKB/Swiss-ProtP14882; PCCA_RAT.



2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_11
Entry namePCCA_RAT
Primary accession numberP14882
Sequence was last modified on November 30, 2010 (version 3)
Annotations were last modified on November 16, 2011 (version 109)
Name and origin of the protein
DescriptionRecName: Full=Propionyl-CoA carboxylase alpha chain, mitochondrial; Short=PCCase subunit alpha; EC=6.4.1.3; AltName: Full=Propanoyl-CoA:carbon dioxide ligase subunit alpha; Flags: Precursor;
Gene nameName=Pcca
Encoded onName=Pcca
KeywordsATP-binding; Biotin; Complete proteome; Direct protein sequencing; Ligase; Mitochondrion; Nucleotide-binding; Reference proteome; Transit peptide.
Copyright
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBLCK228512; -; NOT_ANNOTATED_CDS; mRNA
EMBLM22631; AAA88512.1; ALT_SEQ; mRNA
IPIIPI00765682; -; .
PIRA34337; A34337; .
RefSeqNP_062203.1; NM_019330.1; .
UniGeneRn.6033; -; .
ProteinModelPortalP14882; -; .
STRINGP14882; -; .
PhosphoSiteP14882; -; .
PRIDEP14882; -; .
GeneID687008; -; .
KEGGrno:687008; -; .
CTD5095; -; .
RGD3264; Pcca; .
eggNOGmaNOG15332; -; .
GeneTreeENSGT00550000074675; -; .
HOVERGENHBG000555; -; .
InParanoidP14882; -; .
BioCycMetaCyc:MONOMER-8606; -; .
NextBio733196; -; .
ArrayExpressP14882; -; .
GenevestigatorP14882; -; .
GermOnlineENSRNOG00000014146; Rattus norvegicus; .
GOGO:0005759; C:mitochondrial matrix; IEA:UniProtKB-SubCell; .
GOGO:0005524; F:ATP binding; IEA:UniProtKB-KW; .
GOGO:0004075; F:biotin carboxylase activity; IEA:InterPro; .
GOGO:0046872; F:metal ion binding; IEA:InterPro; .
GOGO:0004658; F:propionyl-CoA carboxylase activity; TAS:RGD; .
GOGO:0009063; P:cellular amino acid catabolic process; TAS:RGD; .
GOGO:0009062; P:fatty acid catabolic process; TAS:RGD; .
InterProIPR011761; ATP-grasp; .
InterProIPR013815; ATP_grasp_subdomain_1; .
InterProIPR013816; ATP_grasp_subdomain_2; .
InterProIPR001882; Biotin_BS; .
InterProIPR011764; Biotin_carboxylation_dom; .
InterProIPR005482; Biotin_COase_C; .
InterProIPR000089; Biotin_lipoyl; .
InterProIPR005479; CarbamoylP_synth_lsu_ATP-bd; .
InterProIPR005481; CarbamoylP_synth_lsu_N; .
InterProIPR013817; Pre-ATP_grasp; .
InterProIPR016185; PreATP-grasp-like; .
InterProIPR011054; Rudment_hybrid_motif; .
InterProIPR011053; Single_hybrid_motif; .
Gene3DG3DSA:3.30.1490.20; ATP_grasp_subdomain_1; 1; .
Gene3DG3DSA:3.30.470.20; ATP_grasp_subdomain_2; 1; .
Gene3DG3DSA:3.40.50.20; Pre-ATP_grasp; 1; .
KOK01965; -; .
PfamPF02785; Biotin_carb_C; 1; .
PfamPF00364; Biotin_lipoyl; 1; .
PfamPF00289; CPSase_L_chain; 1; .
PfamPF02786; CPSase_L_D2; 1; .
SMARTSM00878; Biotin_carb_C; 1; .
SUPFAMSSF51230; Hybrid_motif; 1; .
SUPFAMSSF52440; PreATP-grasp-like; 1; .
SUPFAMSSF51246; Rudmnt_hyb_motif; 1; .
PROSITEPS50975; ATP_GRASP; 1; .
PROSITEPS50979; BC; 1; .
PROSITEPS00188; BIOTIN; 1; .
PROSITEPS50968; BIOTINYL_LIPOYL; 1; .
PROSITEPS00866; CPSASE_1; 1; .
PROSITEPS00867; CPSASE_2; 1; .



World-2DPAGE Repository image

World-2DPAGE Repository (search AC)


Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the ExPASy web server