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Searching in 'World-2DPAGE Repository [0030]' for entry matching: Q4KMA2




World-2DPAGE Repository (0030):  Q4KMA2


Q4KMA2


General information about the entry
View entry in simple text format
Entry nameRD23B_RAT
Primary accession numberQ4KMA2
integrated into World-2DPAGE Repository (0030) on November 9, 2010 (release 1)
2D Annotations were last modified onJune 21, 2011 (version 2)
General Annotations were last modified on November 23, 2011 (version 2)
Name and origin of the protein
DescriptionRecName: Full=UV excision repair protein RAD23 homolog B;.
Gene nameName=Rad23b
Annotated speciesRattus norvegicus (Rat) [TaxID: 10116]
TaxonomyEukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
References
[1]   2D-PAGE GEL CHARACTERIZATION
DOI=10.1002/pmic.201000006;
D'Hertog W., Maris M., Thorrez L., Waelkens E., Overbergh L., Mathieu C.
''Two-dimensional gel proteome reference map of INS-1E cells''
Proteomics 11(7):1365-1369 (2011)
2D PAGE maps for identified proteins
How to interpret a protein

RAT_INS1E_4-7 {INS-1E cell line, a model rat cell line for pancreatic beta cells, PH4-7}
Rattus norvegicus (Rat)
RAT_INS1E_4-7
  map experimental info
 
RAT_INS1E_4-7

MAP LOCATIONS:
pI=4.62; Mw=67366  [identification data]

IDENTIFICATION: SPOT 851: Mascot protein score=119. Number of peptides=5 [1].
MAPPING (identification):
SPOT 851: Tandem mass spectrometry [1].

Copyright
Data from Dr. Wannes D'Hertog, Catholic University Leuven, Belgium
Cross-references
UniProtKB/Swiss-ProtQ4KMA2; RD23B_RAT.
World-2DPAGE RepositoryQ4KMA2; RD23B_RAT.



2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_11
Entry nameRD23B_RAT
Primary accession numberQ4KMA2
Secondary accession number(s) Q0D2G8 Q5CZZ8 Q6IRD5
Sequence was last modified on August 2, 2005 (version 1)
Annotations were last modified on November 16, 2011 (version 55)
Name and origin of the protein
DescriptionRecName: Full=UV excision repair protein RAD23 homolog B;
Gene nameName=Rad23b
Encoded onName=Rad23b
KeywordsAcetylation; Complete proteome; Cytoplasm; Direct protein sequencing; DNA damage; DNA repair; Nucleus; Phosphoprotein; Proteasome; Reference proteome; Repeat; Ubl conjugation pathway.
Copyright
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBLBC070960; AAH70960.1; -; mRNA
EMBLBC090351; AAH90351.1; -; mRNA
EMBLBC098674; AAH98674.1; -; mRNA
EMBLBC111406; AAI11407.1; -; mRNA
IPIIPI00210495; -; .
RefSeqNP_001020446.1; NM_001025275.1; .
UniGeneRn.67042; -; .
HSSPP54728; 2F4M; .
ProteinModelPortalQ4KMA2; -; .
SMRQ4KMA2; 1-82; 184-231; 273-332
371-415.
IntActQ4KMA2; 55; .
STRINGQ4KMA2; -; .
PhosphoSiteQ4KMA2; -; .
PRIDEQ4KMA2; -; .
EnsemblENSRNOT00000021629; ENSRNOP00000021629; ENSRNOG00000016137; .
GeneID298012; -; .
KEGGrno:298012; -; .
NMPDRfig|10116.3.peg.23168; -; .
UCSCNM_001025275; rat; .
CTD5887; -; .
RGD1562958; Rad23b; .
eggNOGroNOG07444; -; .
GeneTreeENSGT00390000012078; -; .
HOVERGENHBG055042; -; .
InParanoidQ4KMA2; -; .
OMADATSALX; -; .
OrthoDBEOG4M399F; -; .
PhylomeDBQ4KMA2; -; .
NextBio642963; -; .
ArrayExpressQ4KMA2; -; .
GenevestigatorQ4KMA2; -; .
GOGO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell; .
GOGO:0000502; C:proteasome complex; IEA:UniProtKB-KW; .
GOGO:0071942; C:XPC complex; ISS:UniProtKB; .
GOGO:0003684; F:damaged DNA binding; IEA:InterPro; .
GOGO:0043161; P:proteasomal ubiquitin-dependent protein catabolic process; IEA:InterPro; .
InterProIPR004806; Rad23; .
InterProIPR006636; STI1_HS-bd; .
InterProIPR009060; UBA-like; .
InterProIPR000449; UBA/transl_elong_EF1B_N; .
InterProIPR015940; UBA/transl_elong_EF1B_N_euk; .
InterProIPR000626; Ubiquitin; .
InterProIPR019955; Ubiquitin_supergroup; .
InterProIPR015360; XPC-bd; .
Gene3DG3DSA:1.10.10.540; XPC-bd; 1; .
KOK10839; -; .
PfamPF00627; UBA; 2; .
PfamPF00240; ubiquitin; 1; .
PfamPF09280; XPC-binding; 1; .
PRINTSPR01839; RAD23PROTEIN; .
SMARTSM00727; STI1; 1; .
SMARTSM00165; UBA; 2; .
SMARTSM00213; UBQ; 1; .
SUPFAMSSF46934; UBA_like; 2; .
SUPFAMSSF101238; XPC-bd; 1; .
TIGRFAMsTIGR00601; Rad23; 1; .
PROSITEPS50030; UBA; 2; .
PROSITEPS00299; UBIQUITIN_1; FALSE_NEG; .
PROSITEPS50053; UBIQUITIN_2; 1; .



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Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the ExPASy web server