World-2DPAGE Home
Home  |  Contact
Due to maintenance work, this service and ftp://ftp.expasy.org will be unavailable from Tuesday August 23rd 18:00 until Wednesday August 24th 08:00 CEST. Apologies for the inconvenience.

World-2DPAGE Repository 
Search by  [accession number] *
[description, ID or gene] 
[author names] 
[spot ID / serial number] 
[identification methods] 
[pI / Mw range] 
[combined fields] 
Maps  [experimental info] 
[protein list] 
[graphical interface]
     Databases

use 'Ctrl' to select several
databases

Select Remote Interfaces
[All Interfaces]
SWISS-2DPAGE
World-2DPAGE Portal
Exclude local DBs
has only effect if a remote
interface is selected
     
Searching in 'World-2DPAGE Repository [0030]' for entry matching: Q4V8K6




World-2DPAGE Repository (0030):  Q4V8K6

Q4V8K6


General information about the entry
View entry in simple text format
Entry nameQ4V8K6_RAT
Primary accession numberQ4V8K6
integrated into World-2DPAGE Repository (0030) on November 9, 2010 (release 1)
2D Annotations were last modified onJune 21, 2011 (version 2)
General Annotations were last modified on November 23, 2011 (version 2)
Name and origin of the protein
DescriptionSubName: Full=Heterogeneous nuclear ribonucleoprotein C (C1/C2);.
Gene nameName=Hnrnpc
Annotated speciesRattus norvegicus (Rat) [TaxID: 10116]
TaxonomyEukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
References
[1]   2D-PAGE GEL CHARACTERIZATION
DOI=10.1002/pmic.201000006;
D'Hertog W., Maris M., Thorrez L., Waelkens E., Overbergh L., Mathieu C.
''Two-dimensional gel proteome reference map of INS-1E cells''
Proteomics 11(7):1365-1369 (2011)
2D PAGE maps for identified proteins
How to interpret a protein

RAT_INS1E_4-7 {INS-1E cell line, a model rat cell line for pancreatic beta cells, PH4-7}
Rattus norvegicus (Rat)
RAT_INS1E_4-7
  map experimental info 		 
RAT_INS1E_4-7

MAP LOCATIONS:
pI=4.88; Mw=47670  [identification data]
pI=4.85; Mw=47736  [identification data]
pI=4.90; Mw=47538  [identification data]
pI=4.90; Mw=45986  [identification data]

IDENTIFICATION: SPOT 1433: Mascot protein score=145. Number of peptides=4 [1]
SPOT 1437: Mascot protein score=30. Number of peptides=2 [1]; SPOT 1438: Mascot protein score=31. Number of peptides=1 [1]; SPOT 1488: Mascot protein score=71. Number of peptides=5 [1].
MAPPING (identification):
SPOT 1433: Tandem mass spectrometry [1];
SPOT 1437: Tandem mass spectrometry [1];
SPOT 1438: Tandem mass spectrometry [1];
SPOT 1488: Tandem mass spectrometry [1].

Copyright
Data from Dr. Wannes D'Hertog, Catholic University Leuven, Belgium
Cross-references
UniProtKB/TrEMBLQ4V8K6; Q4V8K6_RAT.
World-2DPAGE RepositoryQ4V8K6; Q4V8K6_RAT.



2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/TrEMBL
Extracted from UniProtKB/TrEMBL, release: 2011_11
Entry nameQ4V8K6_RAT
Primary accession numberQ4V8K6
Sequence was last modified on July 5, 2005 (version 1)
Annotations were last modified on November 16, 2011 (version 54)
Name and origin of the protein
DescriptionSubName: Full=Heterogeneous nuclear ribonucleoprotein C (C1/C2);
Gene nameName=Hnrnpc
Encoded onName=Hnrnpc
KeywordsRibonucleoprotein; Viral nucleoprotein; Virion.
Cross-references
EMBLBC097346; AAH97346.1; -; mRNA
IPIIPI00187860; -; .
RefSeqNP_001020804.1; NM_001025633.1; .
UniGeneRn.101929; -; .
ProteinModelPortalQ4V8K6; -; .
SMRQ4V8K6; 2-92; 179-206; .
MINTMINT-7138494; -; .
STRINGQ4V8K6; -; .
PhosphoSiteQ4V8K6; -; .
PRIDEQ4V8K6; -; .
GeneID290046; -; .
KEGGrno:290046; -; .
UCSCNM_001025633; rat; .
CTD3183; -; .
RGD1309982; Hnrnpc; .
eggNOGroNOG13664; -; .
GeneTreeENSGT00390000006718; -; .
HOVERGENHBG002302; -; .
OrthoDBEOG45490H; -; .
NextBio630648; -; .
ArrayExpressQ4V8K6; -; .
GenevestigatorQ4V8K6; -; .
GOGO:0005681; C:spliceosomal complex; ISS:HGNC; .
GOGO:0003676; F:nucleic acid binding; IEA:UniProtKB-KW; .
GOGO:0000166; F:nucleotide binding; IEA:InterPro; .
InterProIPR017347; hnRNP_C_Raly; .
InterProIPR012677; Nucleotide-bd_a/b_plait; .
InterProIPR000504; RRM_dom; .
Gene3DG3DSA:3.30.70.330; a_b_plait_nuc_bd; 1; .
KOK12884; -; .
PfamPF00076; RRM_1; 1; .
PIRSFPIRSF037992; hnRNP-C_Raly; 1; .
SMARTSM00360; RRM; 1; .
PROSITEPS50102; RRM; 1; .


World-2DPAGE Repository image

World-2DPAGE Repository (search AC)

Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the ExPASy web server