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World-2DPAGE Repository
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Searching in 'World-2DPAGE Repository [0030]' for entry
matching:
Q4V8K6
World-2DPAGE Repository
(0030):
Q4V8K6
Q4V8K6
General information about the entry
View entry in simple text format
Entry name
Q4V8K6_RAT
Primary accession number
Q4V8K6
integrated into World-2DPAGE Repository (0030) on
November 9, 2010 (release 1)
2D Annotations were last modified on
June 21, 2011 (version 2)
General Annotations were last modified on
November 23, 2011 (version 2)
Name and origin of the protein
Description
SubName: Full=Heterogeneous nuclear ribonucleoprotein C (C1/C2);.
Gene name
Name=Hnrnpc
Annotated species
Rattus norvegicus (Rat) [TaxID:
10116
]
Taxonomy
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
References
[1]
2D-PAGE GEL CHARACTERIZATION
DOI=
10.1002/pmic.201000006
;
D'Hertog W., Maris M., Thorrez L., Waelkens E., Overbergh L., Mathieu C.
''Two-dimensional gel proteome reference map of INS-1E cells''
Proteomics 11(7):1365-1369 (2011)
2D PAGE maps for identified proteins
How to interpret a protein
RAT_INS1E_4-7
{INS-1E cell line, a model rat cell line for pancreatic beta cells, PH4-7}
Rattus norvegicus (Rat)
map experimental info
RAT_INS1E_4-7
MAP LOCATIONS:
SPOT 1433
:
pI=4.88; Mw=47670
[identification data]
SPOT 1437
:
pI=4.85; Mw=47736
[identification data]
SPOT 1438
:
pI=4.90; Mw=47538
[identification data]
SPOT 1488
:
pI=4.90; Mw=45986
[identification data]
IDENTIFICATION:
SPOT 1433: Mascot protein score=145. Number of peptides=4 [
1
]
SPOT 1437: Mascot protein score=30. Number of peptides=2 [
1
]; SPOT 1438: Mascot protein score=31. Number of peptides=1 [
1
]; SPOT 1488: Mascot protein score=71. Number of peptides=5 [
1
].
MAPPING (identification):
SPOT
1433
:
Tandem mass spectrometry
[
1
];
SPOT
1437
:
Tandem mass spectrometry
[
1
];
SPOT
1438
:
Tandem mass spectrometry
[
1
];
SPOT
1488
:
Tandem mass spectrometry
[
1
].
Copyright
Data from Dr. Wannes D'Hertog, Catholic University Leuven, Belgium
Cross-references
UniProtKB/TrEMBL
Q4V8K6; Q4V8K6_RAT.
World-2DPAGE Repository
Q4V8K6; Q4V8K6_RAT.
2D PAGE maps for identified proteins
How to interpret a protein map
You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
Warning 1
: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
Warning 2
: the 2D PAGE map is built on demand. This may take some few seconds to be computed.
External data extracted from
UniProtKB/TrEMBL
Extracted from
UniProtKB/TrEMBL
, release:
2011_11
Entry name
Q4V8K6_RAT
Primary accession number
Q4V8K6
Sequence was last modified on
July 5, 2005 (version 1)
Annotations were last modified on
November 16, 2011 (version 54)
Name and origin of the protein
Description
SubName: Full=Heterogeneous nuclear ribonucleoprotein C (C1/C2);
Gene name
Name=Hnrnpc
Encoded on
Name=Hnrnpc
Keywords
Ribonucleoprotein
;
Viral nucleoprotein
;
Virion
.
Cross-references
EMBL
BC097346; AAH97346.1
; -; mRNA
IPI
IPI00187860; -
; .
RefSeq
NP_001020804.1; NM_001025633.1
; .
UniGene
Rn.101929; -
; .
ProteinModelPortal
Q4V8K6; -
; .
SMR
Q4V8K6; 2-92
; 179-206; .
MINT
MINT-7138494; -
; .
STRING
Q4V8K6; -
; .
PhosphoSite
Q4V8K6; -
; .
PRIDE
Q4V8K6; -
; .
GeneID
290046; -
; .
KEGG
rno:290046; -
; .
UCSC
NM_001025633; rat
; .
CTD
3183; -
; .
RGD
1309982; Hnrnpc
; .
eggNOG
roNOG13664; -
; .
GeneTree
ENSGT00390000006718; -
; .
HOVERGEN
HBG002302; -
; .
OrthoDB
EOG45490H; -
; .
NextBio
630648; -
; .
ArrayExpress
Q4V8K6; -
; .
Genevestigator
Q4V8K6; -
; .
GO
GO:0005681; C:spliceosomal complex
; ISS:HGNC; .
GO
GO:0003676; F:nucleic acid binding
; IEA:UniProtKB-KW; .
GO
GO:0000166; F:nucleotide binding
; IEA:InterPro; .
InterPro
IPR017347; hnRNP_C_Raly
; .
InterPro
IPR012677; Nucleotide-bd_a/b_plait
; .
InterPro
IPR000504; RRM_dom
; .
Gene3D
G3DSA:3.30.70.330; a_b_plait_nuc_bd
; 1; .
KO
K12884; -
; .
Pfam
PF00076; RRM_1
; 1; .
PIRSF
PIRSF037992; hnRNP-C_Raly
; 1; .
SMART
SM00360; RRM
; 1; .
PROSITE
PS50102; RRM
; 1; .
World-2DPAGE Repository (search AC)
Database constructed and maintained by
SIB
, using the
Make2D-DB II
package (
ver. 3.10.2
) from the
World-2DPAGE Constellation
of the
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