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Searching in 'World-2DPAGE Repository [0019]' for entry matching: Q5EBA4




World-2DPAGE Repository (0019):  Q5EBA4


Q5EBA4


General information about the entry
View entry in simple text format
Entry nameQ5EBA4_RAT
Primary accession numberQ5EBA4
integrated into World-2DPAGE Repository (0019) on December 9, 2009 (release 1)
2D Annotations were last modified onMay 30, 2011 (version 2)
General Annotations were last modified on January 13, 2012 (version 2)
Name and origin of the protein
DescriptionSubName: Full=Nipsnap1 protein; Flags: Fragment;.
Gene nameName=Nipsnap1
Annotated speciesRattus norvegicus (Rat) [TaxID: 10116]
TaxonomyEukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
References
[1]   2D-PAGE GEL CHARACTERIZATION
DOI=10.1111/j.1471-4159.2010.06719.x;
VanGuilder H.D., Yan H., Farley J.A., Sonntag W.E., Freeman W.M.
''Aging alters the expression of neurotransmission-regulating proteins in the hippocampal synaptoproteome''
J of Neurochemistry 113(6):1577-1588 (2010)
2D PAGE maps for identified proteins
How to interpret a protein

HIPP_SYNAP {Rat hippocampal synaptoproteome}
Rattus norvegicus (Rat)
Tissue: Hippocampus
HIPP_SYNAP
  map experimental info
 
HIPP_SYNAP

MAP LOCATIONS:
pI=9.44; Mw=33610  [identification data]

IDENTIFICATION: SPOT 696: Peptides number=4. SeqCov=12.7%. MOWSE score=1.20E+2 [1].
MAPPING (identification):
SPOT 696: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1].

Copyright
Data from Dr. Willard Freeman, Penn State College of Medicine, USA
Cross-references
UniProtKB/TrEMBLQ5EBA4; Q5EBA4_RAT.



2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/TrEMBL
Extracted from UniProtKB/TrEMBL, release: 2011_12
Entry nameQ5EBA4_RAT
Primary accession numberQ5EBA4
Sequence was last modified on March 15, 2005 (version 1)
Annotations were last modified on December 14, 2011 (version 46)
Name and origin of the protein
DescriptionSubName: Full=Nipsnap1 protein; Flags: Fragment;
Gene nameName=Nipsnap1
Encoded onName=Nipsnap1
KeywordsName=Nipsnap1.
Cross-references
EMBLBC089879; AAH89879.1; -; mRNA
IPIIPI00364134; -; .
RefSeqNP_001094200.1; NM_001100730.1; .
UniGeneRn.103205; -; .
ProteinModelPortalQ5EBA4; -; .
IntActQ5EBA4; 1; .
STRINGQ5EBA4; -; .
PhosphoSiteQ5EBA4; -; .
PRIDEQ5EBA4; -; .
GeneID360971; -; .
KEGGrno:360971; -; .
NMPDRfig|10116.3.peg.10669; -; .
CTD8508; -; .
RGD1310419; Nipsnap1; .
eggNOGroNOG14535; -; .
GeneTreeENSGT00530000063035; -; .
HOVERGENHBG052627; -; .
OMAHNVKPEY; -; .
OrthoDBEOG4QFWF5; -; .
NextBio674760; -; .
ArrayExpressQ5EBA4; -; .
GenevestigatorQ5EBA4; -; .
InterProIPR011008; Dimeric_a/b-barrel; .
InterProIPR012577; NIPSNAP; .
PfamPF07978; NIPSNAP; 1; .
SUPFAMSSF54909; Dimer_A_B_barrel; 2; .



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Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the Expasy web server