World-2DPAGE Home
Home  |  Contact
Due to maintenance work, this service and ftp://ftp.expasy.org will be unavailable from Tuesday August 23rd 18:00 until Wednesday August 24th 08:00 CEST. Apologies for the inconvenience.

World-2DPAGE Repository 
Search by  [accession number] *
[description, ID or gene] 
[author names] 
[spot ID / serial number] 
[identification methods] 
[pI / Mw range] 
[combined fields] 
Maps  [experimental info] 
[protein list] 
[graphical interface]
     Databases

use 'Ctrl' to select several
databases

Select Remote Interfaces
[All Interfaces]
SWISS-2DPAGE
World-2DPAGE Portal
Exclude local DBs
has only effect if a remote
interface is selected
     
Searching in 'World-2DPAGE Repository [0019]' for entry matching: Q5XI78




World-2DPAGE Repository (0019):  Q5XI78

Q5XI78


General information about the entry
View entry in simple text format
Entry nameODO1_RAT
Primary accession numberQ5XI78
integrated into World-2DPAGE Repository (0019) on December 9, 2009 (release 1)
2D Annotations were last modified onMay 30, 2011 (version 2)
General Annotations were last modified on January 13, 2012 (version 2)
Name and origin of the protein
DescriptionRecName: Full=2-oxoglutarate dehydrogenase, mitochondrial; EC=1.2.4.2; AltName: Full=2-oxoglutarate dehydrogenase complex component E1; Short=OGDC-E1; AltName: Full=Alpha-ketoglutarate dehydrogenase; Flags: Precursor;.
Gene nameName=Ogdh
Synonyms=Ogdhl
Annotated speciesRattus norvegicus (Rat) [TaxID: 10116]
TaxonomyEukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
References
[1]   2D-PAGE GEL CHARACTERIZATION
DOI=10.1111/j.1471-4159.2010.06719.x;
VanGuilder H.D., Yan H., Farley J.A., Sonntag W.E., Freeman W.M.
''Aging alters the expression of neurotransmission-regulating proteins in the hippocampal synaptoproteome''
J of Neurochemistry 113(6):1577-1588 (2010)
2D PAGE maps for identified proteins
How to interpret a protein

HIPP_SYNAP {Rat hippocampal synaptoproteome}
Rattus norvegicus (Rat)
Tissue: Hippocampus
HIPP_SYNAP
  map experimental info 		 
HIPP_SYNAP

MAP LOCATIONS:
pI=6.30; Mw=117418  [identification data]
pI=6.30; Mw=117418  [identification data]

IDENTIFICATION: SPOT 134: Peptides number=11. SeqCov=12.4%. MOWSE score=6.52E+6 [1]
SPOT 135: Peptides number=9. SeqCov=11.5%. MOWSE score=3.57E+8 [1].
MAPPING (identification):
SPOT 134: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1];
SPOT 135: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1].

Copyright
Data from Dr. Willard Freeman, Penn State College of Medicine, USA
Cross-references
UniProtKB/Swiss-ProtQ5XI78; ODO1_RAT.



2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_12
Entry nameODO1_RAT
Primary accession numberQ5XI78
Sequence was last modified on November 23, 2004 (version 1)
Annotations were last modified on November 16, 2011 (version 59)
Name and origin of the protein
DescriptionRecName: Full=2-oxoglutarate dehydrogenase, mitochondrial; EC=1.2.4.2; AltName: Full=2-oxoglutarate dehydrogenase complex component E1; Short=OGDC-E1; AltName: Full=Alpha-ketoglutarate dehydrogenase; Flags: Precursor;
Gene nameName=Ogdh
Synonyms=Ogdhl
Encoded onName=Ogdh; Synonyms=Ogdhl
KeywordsAcetylation; Complete proteome; Direct protein sequencing; Glycolysis; Isopeptide bond; Mitochondrion; Oxidoreductase; Reference proteome; Thiamine pyrophosphate; Transit peptide; Ubl conjugation.
Copyright
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBLBC083811; AAH83811.1; -; mRNA
IPIIPI00215093; -; .
RefSeqNP_001017461.1; NM_001017461.1; .
UniGeneRn.45991; -; .
ProteinModelPortalQ5XI78; -; .
STRINGQ5XI78; -; .
World-2DPAGE0004:Q5XI78; -; .
PRIDEQ5XI78; -; .
EnsemblENSRNOT00000057199; ENSRNOP00000054026; ENSRNOG00000005130; .
GeneID360975; -; .
KEGGrno:360975; -; .
NMPDRfig|10116.3.peg.10710; -; .
UCSCNM_001017461; rat; .
CTD4967; -; .
RGD1561359; Ogdh; .
eggNOGroNOG15522; -; .
GeneTreeENSGT00530000063092; -; .
HOVERGENHBG001892; -; .
PhylomeDBQ5XI78; -; .
NextBio674779; -; .
ArrayExpressQ5XI78; -; .
GenevestigatorQ5XI78; -; .
GOGO:0005759; C:mitochondrial matrix; IEA:UniProtKB-SubCell; .
GOGO:0031966; C:mitochondrial membrane; ISS:UniProtKB; .
GOGO:0045252; C:oxoglutarate dehydrogenase complex; IDA:RGD; .
GOGO:0051087; F:chaperone binding; IPI:RGD; .
GOGO:0031072; F:heat shock protein binding; IPI:RGD; .
GOGO:0004591; F:oxoglutarate dehydrogenase (succinyl-transferring) activity; ISS:UniProtKB; .
GOGO:0030976; F:thiamine pyrophosphate binding; IEA:InterPro; .
GOGO:0006103; P:2-oxoglutarate metabolic process; IDA:RGD; .
GOGO:0006096; P:glycolysis; IEA:UniProtKB-KW; .
GOGO:0006734; P:NADH metabolic process; IDA:RGD; .
GOGO:0006104; P:succinyl-CoA metabolic process; IDA:RGD; .
GOGO:0006099; P:tricarboxylic acid cycle; IDA:RGD; .
InterProIPR011603; 2oxoglutarate_DH_E1; .
InterProIPR001017; DH_E1; .
InterProIPR005475; Transketolase-like_Pyr-bd; .
KOK00164; -; .
PANTHERPTHR23152; 2oxoglutarate_DH_E1; 1; .
PfamPF00676; E1_dh; 1; .
PfamPF02779; Transket_pyr; 1; .
PIRSFPIRSF000157; Oxoglu_dh_E1; 1; .
SMARTSM00861; Transket_pyr; 1; .
TIGRFAMsTIGR00239; 2oxo_dh_E1; 1; .


World-2DPAGE Repository image

World-2DPAGE Repository (search AC)

Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the ExPASy web server