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World-2DPAGE Repository
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Searching in 'World-2DPAGE Repository [0004]' for entry
matching:
Q63537
World-2DPAGE Repository
(0004):
Q63537
Q63537
General information about the entry
View entry in simple text format
Entry name
SYN2_RAT
Primary accession number
Q63537
integrated into World-2DPAGE Repository (0004) on
October 13, 2008 (release 1)
2D Annotations were last modified on
May 18, 2011 (version 2)
General Annotations were last modified on
December 22, 2011 (version 2)
Name and origin of the protein
Description
RecName: Full=Synapsin-2; AltName: Full=Synapsin II;.
Gene name
Name=Syn2
Annotated species
Rattus norvegicus (Rat) [TaxID:
10116
]
Taxonomy
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
References
[1]
MAPPING ON GEL
PubMed=19343716; DOI=
10.1002/pmic.200800664
; [
NCBI
,
EBI
,
Israel
,
Japan
]
Maurya D.K., Sundaram C.S., Bhargava P.
''Proteome profile of the mature rat olfactory bulb''
Proteomics 9(1):2593-2599 (2009)
2D PAGE maps for identified proteins
How to interpret a protein
OB21DSUB
{2-DE gel for Olfactory bulb proteome}
Rattus norvegicus (Rat)
Tissue: Olfactory bulb
map experimental info
OB21DSUB
MAP LOCATIONS:
SPOT 783
:
pI=6.78; Mw=54000
[identification data]
MAPPING (identification):
SPOT
783
:
Peptide mass fingerprinting
[
1
];
Tandem mass spectrometry
[
1
].
Copyright
Data from Dr. Purnima Bhargava, Centre for Cellular and Molecular Biology, India
Cross-references
UniProtKB/Swiss-Prot
Q63537; SYN2_RAT.
2D PAGE maps for identified proteins
How to interpret a protein map
You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
Warning 1
: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
Warning 2
: the 2D PAGE map is built on demand. This may take some few seconds to be computed.
External data extracted from
UniProtKB/Swiss-Prot
Extracted from
UniProtKB/Swiss-Prot
, release:
2011_12
Entry name
SYN2_RAT
Primary accession number
Q63537
Secondary accession number(s)
Q9Z1H0
Sequence was last modified on
November 1, 1996 (version 1)
Annotations were last modified on
September 21, 2011 (version 93)
Name and origin of the protein
Description
RecName: Full=Synapsin-2; AltName: Full=Synapsin II;
Gene name
Name=Syn2
Encoded on
Name=Syn2
Keywords
3D-structure
;
Alternative splicing
;
Cell junction
;
Complete proteome
;
Direct protein sequencing
;
Phosphoprotein
;
Reference proteome
;
Synapse
.
Copyright
Copyrighted by the UniProt Consortium, see
https://www.uniprot.org/help/license
. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBL
M27925; AAA42100.1
; -; mRNA
EMBL
M27926; AAA42101.1
; -; mRNA
IPI
IPI00210036; -
; .
IPI
IPI00231408; -
; .
PIR
C30411; C30411
; .
RefSeq
NP_001029192.1; NM_001034020.1
; .
RefSeq
NP_062032.1; NM_019159.1
; .
UniGene
Rn.506; -
; .
PDB
1I7L; X-ray
; 2.35 A; A/B=113-421
PDB
1I7N; X-ray
; 1.90 A; A/B=113-421
PDBsum
1I7L; -
; .
PDBsum
1I7N; -
; .
ProteinModelPortal
Q63537; -
; .
SMR
Q63537; 113-421
; .
IntAct
Q63537; 1
; .
MINT
MINT-233013; -
; .
STRING
Q63537; -
; .
PhosphoSite
Q63537; -
; .
World-2DPAGE
0004:Q63537; -
; .
PRIDE
Q63537; -
; .
GeneID
29179; -
; .
KEGG
rno:29179; -
; .
UCSC
NM_001034020; rat
; .
CTD
6854; -
; .
RGD
3798; Syn2
; .
eggNOG
roNOG09210; -
; .
GeneTree
ENSGT00530000063319; -
; .
HOVERGEN
HBG016354; -
; .
InParanoid
Q63537; -
; .
OrthoDB
EOG4KPTB4; -
; .
NextBio
608259; -
; .
PMAP-CutDB
Q63537; -
; .
ArrayExpress
Q63537; -
; .
Genevestigator
Q63537; -
; .
GermOnline
ENSRNOG00000008157; Rattus norvegicus
; .
GO
GO:0030054; C:cell junction
; IEA:UniProtKB-KW; .
GO
GO:0005524; F:ATP binding
; IEA:InterPro; .
GO
GO:0008092; F:cytoskeletal protein binding
; TAS:RGD; .
GO
GO:0016874; F:ligase activity
; IEA:InterPro; .
GO
GO:0046928; P:regulation of neurotransmitter secretion
; TAS:RGD; .
InterPro
IPR013815; ATP_grasp_subdomain_1
; .
InterPro
IPR013816; ATP_grasp_subdomain_2
; .
InterPro
IPR013817; Pre-ATP_grasp
; .
InterPro
IPR016185; PreATP-grasp-like
; .
InterPro
IPR001359; Synapsin
; .
InterPro
IPR020898; Synapsin_ATP-bd_dom
; .
InterPro
IPR019735; Synapsin_CS
; .
InterPro
IPR019736; Synapsin_P_site
; .
InterPro
IPR020897; Synapsin_pre-ATP-grasp_dom
; .
Gene3D
G3DSA:3.30.1490.20; ATP_grasp_subdomain_1
; 1; .
Gene3D
G3DSA:3.30.470.20; ATP_grasp_subdomain_2
; 2; .
Gene3D
G3DSA:3.40.50.20; Pre-ATP_grasp
; 1; .
Pfam
PF02078; Synapsin
; 1; .
Pfam
PF02750; Synapsin_C
; 1; .
Pfam
PF10581; Synapsin_N
; 1; .
PRINTS
PR01368; SYNAPSIN
; .
SUPFAM
SSF52440; PreATP-grasp-like
; 1; .
PROSITE
PS00415; SYNAPSIN_1
; 1; .
PROSITE
PS00416; SYNAPSIN_2
; 1; .
World-2DPAGE Repository (search AC)
Database constructed and maintained by
SIB
, using the
Make2D-DB II
package (
ver. 3.10.2
) from the
World-2DPAGE Constellation
of the
Expasy web server