World-2DPAGE Home
Home  |  Contact
Due to scheduled maintenance work, this service will not be available from Tuesday August 23rd 06:00 pm until Wednesday August 24th 08:00 am CEST. Apologies for the inconvenience.

World-2DPAGE Repository 
Search by  [accession number] *
[description, ID or gene] 
[author names] 
[spot ID / serial number] 
[identification methods] 
[pI / Mw range] 
[combined fields] 
Maps  [experimental info] 
[protein list] 
[graphical interface]
     Databases

use 'Ctrl' to select several
databases

Select Remote Interfaces
[All Interfaces]
SWISS-2DPAGE
World-2DPAGE Portal
Exclude local DBs
has only effect if a remote
interface is selected
     
Searching in 'World-2DPAGE Repository [0014]' for entry matching: Q64537




World-2DPAGE Repository (0014):  Q64537

Q64537


General information about the entry
View entry in simple text format
Entry nameCPNS1_RAT
Primary accession numberQ64537
integrated into World-2DPAGE Repository (0014) on October 13, 2008 (release 1)
2D Annotations were last modified onJune 1, 2011 (version 3)
General Annotations were last modified on November 25, 2011 (version 2)
Name and origin of the protein
DescriptionRecName: Full=Calpain small subunit 1; Short=CSS1; AltName: Full=Calcium-activated neutral proteinase small subunit; Short=CANP small subunit; AltName: Full=Calcium-dependent protease small subunit; Short=CDPS; AltName: Full=Calcium-dependent protease small subunit 1; AltName: Full=Calpain regulatory subunit;.
Gene nameName=Capns1
Synonyms=Capn4, Css1
Annotated speciesRattus norvegicus (Rat) [TaxID: 10116]
TaxonomyEukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
References
[1]   2D-PAGE GEL CHARACTERIZATION
DOI=10.1002/pmic.200900680;
Maurya D.K., Sundaram C.S., Bhargava P.
''Proteome profile of whole cerebellum of the mature rat''
Proteomics 10(23):4311-4319 (2010)
2D PAGE maps for identified proteins
How to interpret a protein

RAT_CEREBELLUM_21D {Proteome of 21 days old rat cerebellum}
Rattus norvegicus (Rat)
Tissue: Cerebellum
RAT_CEREBELLUM_21D
  map experimental info 		 
RAT_CEREBELLUM_21D

MAP LOCATIONS:
pI=5.44; Mw=28000  [identification data]

IDENTIFICATION: SPOT 3132: SeqCov=42%. MascotPMF=69 [1].
MAPPING (identification):
SPOT 3132: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1].

Copyright
Data from Dr. Purnima Bhargava, Centre for Cellular and Molecular Biology, India
Cross-references
PRIDE10017.
UniProtKB/Swiss-ProtQ64537; CPNS1_RAT.



2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_11
Entry nameCPNS1_RAT
Primary accession numberQ64537
Secondary accession number(s) P97572 Q4V795
Sequence was last modified on December 6, 2005 (version 3)
Annotations were last modified on November 16, 2011 (version 101)
Name and origin of the protein
DescriptionRecName: Full=Calpain small subunit 1; Short=CSS1; AltName: Full=Calcium-activated neutral proteinase small subunit; Short=CANP small subunit; AltName: Full=Calcium-dependent protease small subunit; Short=CDPS; AltName: Full=Calcium-dependent protease small subunit 1; AltName: Full=Calpain regulatory subunit;
Gene nameName=Capns1
Synonyms=Capn4, Css1
Encoded onName=Capns1; Synonyms=Capn4, Css1
Keywords3D-structure; Calcium; Cell membrane; Complete proteome; Cytoplasm; Direct protein sequencing; Membrane; Reference proteome; Repeat.
Copyright
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBLBC098068; AAH98068.1; -; mRNA
EMBLU53859; AAC53002.1; -; mRNA
EMBLU10861; AAA64828.1; -; mRNA
IPIIPI00213536; -; .
PIRA55143; A55143; .
RefSeqNP_058814.1; NM_017118.1; .
UniGeneRn.3430; -; .
PDB1AJ5; X-ray; 2.30 A; A/B=98-270
PDB1DF0; X-ray; 2.60 A; B=88-270
PDB1DVI; X-ray; 2.30 A; A/B=88-270
PDB1NP8; X-ray; 2.00 A; A/B=91-249
PDB1U5I; X-ray; 2.86 A; B=88-270
PDB3BOW; X-ray; 2.40 A; B=88-270
PDB3DF0; X-ray; 2.95 A; B=88-270
PDBsum1AJ5; -; .
PDBsum1DF0; -; .
PDBsum1DVI; -; .
PDBsum1NP8; -; .
PDBsum1U5I; -; .
PDBsum3BOW; -; .
PDBsum3DF0; -; .
ProteinModelPortalQ64537; -; .
SMRQ64537; 95-270; .
DIPDIP-6140N; -; .
IntActQ64537; 2; .
MINTMINT-112921; -; .
STRINGQ64537; -; .
PRIDEQ64537; -; .
GeneID29156; -; .
KEGGrno:29156; -; .
CTD826; -; .
RGD2270; Capns1; .
eggNOGmaNOG16189; -; .
GeneTreeENSGT00580000081418; -; .
HOVERGENHBG004492; -; .
InParanoidQ64537; -; .
OrthoDBEOG4W6NWR; -; .
PhylomeDBQ64537; -; .
NextBio608179; -; .
GenevestigatorQ64537; -; .
GOGO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell; .
GOGO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell; .
GOGO:0005509; F:calcium ion binding; TAS:RGD; .
GOGO:0046982; F:protein heterodimerization activity; IPI:RGD; .
GOGO:0006508; P:proteolysis; IMP:RGD; .
InterProIPR011992; EF-hand-like_dom; .
InterProIPR018247; EF_Hand_1_Ca_BS; .
InterProIPR018249; EF_HAND_2; .
InterProIPR002048; EF_hand_Ca-bd; .
Gene3DG3DSA:1.10.238.10; EF-Hand_type; 1; .
KOK08583; -; .
SMARTSM00054; EFh; 3; .
PROSITEPS00018; EF_HAND_1; 2; .
PROSITEPS50222; EF_HAND_2; 3; .


World-2DPAGE Repository image

World-2DPAGE Repository (search AC)

Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the ExPASy web server