resource logo

World-2DPAGE Repository

Attention: World-2DPAGE is no longer maintained.

World-2DPAGE Repository no longer accepts submissions.


World-2DPAGE Repository 
Search by  [accession number] *
[description, ID or gene] 
[author names] 
[spot ID / serial number] 
[identification methods] 
[pI / Mw range] 
[combined fields] 

Maps  [experimental info] 
[protein list] 
[graphical interface]

     Databases

use 'Ctrl' to select several
databases


Select Remote Interfaces
[All Interfaces]
SWISS-2DPAGE
World-2DPAGE Portal

Exclude local DBs
has only effect if a remote
interface is selected
     
Searching in 'World-2DPAGE Repository [0022]' for entry matching: Q9Z2L0




World-2DPAGE Repository (0022):  Q9Z2L0


Q9Z2L0


General information about the entry
View entry in simple text format
Entry nameVDAC1_RAT
Primary accession numberQ9Z2L0
integrated into World-2DPAGE Repository (0022) on May 7, 2010 (release 1)
2D Annotations were last modified onJune 22, 2011 (version 2)
General Annotations were last modified on November 24, 2011 (version 2)
Name and origin of the protein
DescriptionRecName: Full=Voltage-dependent anion-selective channel protein 1; Short=VDAC-1; Short=rVDAC1; AltName: Full=Outer mitochondrial membrane protein porin 1;.
Gene nameName=Vdac1
Annotated speciesRattus [TaxID: 10114]
TaxonomyEukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae.
References
[1]   2D-PAGE GEL CHARACTERIZATION
DOI=10.1002/pmic.201000593;
Burniston J.G., Kenyani J., Wastling J.M., Burant C.F., Qi N.R., Koch L.G., Britton S.L.
''Proteomic analysis reveals perturbed energy metabolism and elevated oxidative stress in hearts of rats with inborn low aerobic capacity''
Proteomics 11(16):3369-3379 (2011)
2D PAGE maps for identified proteins
How to interpret a protein

HCR_LCR_HEART {HCR LCR Cardiac Map}
Rattus
Tissue: Heart
HCR_LCR_HEART
  map experimental info
 
HCR_LCR_HEART

MAP LOCATIONS:
pI=8.62; Mw=30851  [identification data]
pI=8.62; Mw=30851  [identification data]
pI=8.62; Mw=30851  [identification data]
pI=8.62; Mw=30851  [identification data]
pI=8.62; Mw=30851  [identification data]

IDENTIFICATION: SPOT 95: SeqCov=54.1%. Peptides MS=9/20. Mascot PMF Score=100 [1]
SPOT 137: SeqCov=58%. Peptides MS=11/20. Mascot PMF Score=118 [1]; SPOT 142: SeqCov=35%. Peptides MS=7/20. Mascot PMF Score=66 [1]; SPOT 371: SeqCov=36.4%. Peptides MS=8/20. Mascot PMF Score=73 [1]; SPOT 754: SeqCov=58%. Peptides MS=10/20. Mascot PMF Score=115 [1].
PEPTIDE EVIDENCE: SPOT 95: 121-EHINLGCDVDFDIAGPSIR-139 (140) / 75-WNTDNTLGTEITVEDQLAR-93 (107) [1]
SPOT 137: 121-EHINLGCDVDFDIAGPSIR-139 (102) / 75-WNTDNTLGTEITVEDQLAR-93 (130) / 175-TDEFQLHTNVNDGTEFGGSIYQK-197 (73) [1]; SPOT 142: 121-EHINLGCDVDFDIAGPSIR-139 (98) [1]; SPOT 371: 121-EHINLGCDVDFDIAGPSIR-139 (98) [1]; SPOT 754: 201-KLETAVNLAWTAGNSNTR-218 (94) / 121-EHINLGCDVDFDIAGPSIR-139 (111) / 75-WNTDNTLGTEITVEDQLAR-93 (82) [1].
MAPPING (identification):
SPOT 95: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1];
SPOT 137: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1];
SPOT 142: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1];
SPOT 371: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1];
SPOT 754: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1].

Copyright
Data from Dr. Jatin Burniston, Liverpool John Moores University, UK
Cross-references
UniProtKB/Swiss-ProtQ9Z2L0; VDAC1_RAT.



2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_11
Entry nameVDAC1_RAT
Primary accession numberQ9Z2L0
Secondary accession number(s) A1L125 Q3MHT8 Q5M944 Q5M972 Q6IN28 Q6P9W9
Sequence was last modified on January 23, 2007 (version 4)
Annotations were last modified on November 16, 2011 (version 84)
Name and origin of the protein
DescriptionRecName: Full=Voltage-dependent anion-selective channel protein 1; Short=VDAC-1; Short=rVDAC1; AltName: Full=Outer mitochondrial membrane protein porin 1;
Gene nameName=Vdac1
Encoded onName=Vdac1
KeywordsAcetylation; Apoptosis; Cell membrane; Complete proteome; Direct protein sequencing; Ion transport; Membrane; Mitochondrion; Mitochondrion outer membrane; NAD; Nucleotide-binding; Phosphoprotein; Porin; Reference proteome; Transmembrane; Transmembrane beta strand; Transport.
Copyright
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBLAF048828; AAD02476.1; -; mRNA
EMBLAB039662; BAB13473.1; -; mRNA
EMBLAF268467; AAF80115.1; -; mRNA
EMBLBC060558; AAH60558.1; ALT_INIT; mRNA
EMBLBC072484; AAH72484.2; -; mRNA
EMBLBC087573; AAH87573.2; -; mRNA
EMBLBC087657; AAH87657.2; -; mRNA
EMBLBC104684; AAI04685.2; -; mRNA
EMBLBC127491; AAI27492.1; -; mRNA
IPIIPI00421874; -; .
RefSeqNP_112643.1; NM_031353.1; .
UniGeneRn.54594; -; .
IntActQ9Z2L0; 1; .
MINTMINT-1541752; -; .
STRINGQ9Z2L0; -; .
PhosphoSiteQ9Z2L0; -; .
World-2DPAGE0004:Q9Z2L0; -; .
PRIDEQ9Z2L0; -; .
EnsemblENSRNOT00000008477; ENSRNOP00000008477; ENSRNOG00000006375; .
GeneID83529; -; .
KEGGrno:83529; -; .
UCSCNM_031353; rat; .
CTD7416; -; .
RGD621575; Vdac1; .
eggNOGroNOG10550; -; .
GeneTreeENSGT00390000011336; -; .
HOVERGENHBG054036; -; .
InParanoidQ9Z2L0; -; .
OrthoDBEOG4T4CVZ; -; .
PhylomeDBQ9Z2L0; -; .
NextBio616021; -; .
ArrayExpressQ9Z2L0; -; .
GenevestigatorQ9Z2L0; -; .
GermOnlineENSRNOG00000006375; Rattus norvegicus; .
GOGO:0005741; C:mitochondrial outer membrane; IDA:RGD; .
GOGO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell; .
GOGO:0046930; C:pore complex; IEA:UniProtKB-KW; .
GOGO:0000166; F:nucleotide binding; IEA:UniProtKB-KW; .
GOGO:0015288; F:porin activity; IEA:UniProtKB-KW; .
GOGO:0032403; F:protein complex binding; IDA:RGD; .
GOGO:0008308; F:voltage-gated anion channel activity; ISS:UniProtKB; .
GOGO:0006915; P:apoptosis; IEA:UniProtKB-KW; .
GOGO:0006851; P:mitochondrial calcium ion transport; IDA:RGD; .
InterProIPR001925; Porin_Euk; .
KOK05862; -; .
PfamPF01459; Porin_3; 1; .
PRINTSPR00185; EUKARYTPORIN; .
PROSITEPS00558; EUKARYOTIC_PORIN; 1; .



World-2DPAGE Repository image

World-2DPAGE Repository (search AC)


Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the Expasy web server