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Searching in 'World-2DPAGE Repository [0030]' for entry matching: RSSA_RAT




World-2DPAGE Repository (0030):  RSSA_RAT


RSSA_RAT


General information about the entry
View entry in simple text format
Entry nameRSSA_RAT
Primary accession numberP38983
integrated into World-2DPAGE Repository (0030) on November 9, 2010 (release 1)
2D Annotations were last modified onJune 21, 2011 (version 2)
General Annotations were last modified on November 23, 2011 (version 2)
Name and origin of the protein
DescriptionRecName: Full=40S ribosomal protein SA; AltName: Full=37 kDa laminin receptor; Short=37LRP; AltName: Full=37/67 kDa laminin receptor; Short=LRP/LR; AltName: Full=67 kDa laminin receptor; Short=67LR; AltName: Full=Laminin receptor 1; Short=LamR; AltName: Full=Laminin-binding protein p40; Short=LBP/p40;.
Gene nameName=Rpsa
Synonyms=Lamr1
Annotated speciesRattus norvegicus (Rat) [TaxID: 10116]
TaxonomyEukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
References
[1]   2D-PAGE GEL CHARACTERIZATION
DOI=10.1002/pmic.201000006;
D'Hertog W., Maris M., Thorrez L., Waelkens E., Overbergh L., Mathieu C.
''Two-dimensional gel proteome reference map of INS-1E cells''
Proteomics 11(7):1365-1369 (2011)
2D PAGE maps for identified proteins
How to interpret a protein

RAT_INS1E_4-7 {INS-1E cell line, a model rat cell line for pancreatic beta cells, PH4-7}
Rattus norvegicus (Rat)
RAT_INS1E_4-7
  map experimental info
 
RAT_INS1E_4-7

MAP LOCATIONS:
pI=4.63; Mw=50942  [identification data]
pI=4.67; Mw=50942  [identification data]
pI=4.56; Mw=50802  [identification data]

IDENTIFICATION: SPOT 1345: Mascot protein score=239. Number of peptides=5 [1]
SPOT 1349: Mascot protein score=344. Number of peptides=7 [1]; SPOT 1350: Mascot protein score=183. Number of peptides=5 [1].
MAPPING (identification):
SPOT 1345: Tandem mass spectrometry [1];
SPOT 1349: Tandem mass spectrometry [1];
SPOT 1350: Tandem mass spectrometry [1].

Copyright
Data from Dr. Wannes D'Hertog, Catholic University Leuven, Belgium
Cross-references
UniProtKB/Swiss-ProtP38983; RSSA_RAT.
World-2DPAGE RepositoryP38983; RSSA_RAT.



2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_11
Entry nameRSSA_RAT
Primary accession numberP38983
Secondary accession number(s) B6ZB78
Sequence was last modified on January 23, 2007 (version 3)
Annotations were last modified on November 16, 2011 (version 97)
Name and origin of the protein
DescriptionRecName: Full=40S ribosomal protein SA; AltName: Full=37 kDa laminin receptor precursor; Short=37LRP; AltName: Full=37/67 kDa laminin receptor; Short=LRP/LR; AltName: Full=67 kDa laminin receptor; Short=67LR; AltName: Full=Laminin receptor 1; Short=LamR; AltName: Full=Laminin-binding protein precursor p40; Short=LBP/p40;
Gene nameName=Rpsa
Synonyms=Lamr1
Encoded onName=Rpsa; Synonyms=Lamr1
KeywordsAcetylation; Cell membrane; Complete proteome; Cytoplasm; Direct protein sequencing; Membrane; Nucleus; Phosphoprotein; Receptor; Reference proteome; Repeat; Ribonucleoprotein; Ribosomal protein.
Copyright
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBLD25224; BAA04953.1; -; mRNA
EMBLFJ386454; ACJ13448.1; -; mRNA
EMBLBC060578; AAH60578.1; -; mRNA
EMBLU04942; AAB60453.1; -; mRNA
EMBLM27798; AAA41509.1; -; mRNA
IPIIPI00215107; -; .
PIRS42405; S42405; .
RefSeqNP_058834.1; NM_017138.1; .
UniGeneRn.121972; -; .
UniGeneRn.161973; -; .
UniGeneRn.999; -; .
ProteinModelPortalP38983; -; .
SMRP38983; 9-205; .
IntActP38983; 2; .
MINTMINT-4568881; -; .
STRINGP38983; -; .
PhosphoSiteP38983; -; .
PRIDEP38983; -; .
EnsemblENSRNOT00000025225; ENSRNOP00000025224; ENSRNOG00000018645; .
GeneID29236; -; .
KEGGrno:29236; -; .
NMPDRfig|10116.3.peg.29466; -; .
UCSCNM_017138; rat; .
CTD3921; -; .
RGD71026; Rpsa; .
eggNOGmaNOG11981; -; .
GeneTreeENSGT00390000015036; -; .
HOVERGENHBG054466; -; .
InParanoidP38983; -; .
OMATDAQAIK; -; .
OrthoDBEOG40ZQZ6; -; .
PhylomeDBP38983; -; .
NextBio608498; -; .
ArrayExpressP38983; -; .
GenevestigatorP38983; -; .
GermOnlineENSRNOG00000018645; Rattus norvegicus; .
GOGO:0030686; C:90S preribosome; IBA:RefGenome; .
GOGO:0005604; C:basement membrane; IDA:RGD; .
GOGO:0022627; C:cytosolic small ribosomal subunit; IDA:RGD; .
GOGO:0005624; C:membrane fraction; IDA:RGD; .
GOGO:0043025; C:neuronal cell body; IDA:RGD; .
GOGO:0005634; C:nucleus; IEA:UniProtKB-SubCell; .
GOGO:0005886; C:plasma membrane; ISS:UniProtKB; .
GOGO:0005055; F:laminin receptor activity; TAS:RGD; .
GOGO:0003735; F:structural constituent of ribosome; IBA:RefGenome; .
GOGO:0016337; P:cell-cell adhesion; IDA:RGD; .
GOGO:0000447; P:endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA; 5.8S rRNA; LSU-rRNA)
IBA:RefGenome.
GOGO:0000461; P:endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA; 5.8S rRNA; LSU-rRNA)
IBA:RefGenome.
GOGO:0030855; P:epithelial cell differentiation; IEP:RGD; .
GOGO:0000028; P:ribosomal small subunit assembly; IBA:RefGenome; .
GOGO:0006407; P:rRNA export from nucleus; IBA:RefGenome; .
GOGO:0006412; P:translation; IBA:RefGenome; .
InterProIPR001865; Ribosomal_S2; .
InterProIPR018130; Ribosomal_S2_CS; .
InterProIPR005707; Ribosomal_S2_euk/arc; .
InterProIPR023591; Ribosomal_S2_flav_dom; .
KOK02998; -; .
PANTHERPTHR11489; Ribosomal_S2_e/a; 1; .
PfamPF00318; Ribosomal_S2; 1; .
PRINTSPR00395; RIBOSOMALS2; .
SUPFAMSSF52313; Ribosomal_S2; 1; .
TIGRFAMsTIGR01012; Sa_S2_E_A; 1; .
PROSITEPS00962; RIBOSOMAL_S2_1; 1; .
PROSITEPS00963; RIBOSOMAL_S2_2; 1; .



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Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the ExPASy web server