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World-2DPAGE Repository  Search by  [accession number]  [description, ID or gene]  [author names]  [spot ID / serial number]  [identification methods]  [pI / Mw range]  [combined fields]  Maps  [experimental info]  [protein list]  [graphical interface]      Databases 0001 0002 0003 0004 0005 0006 0007 0008 0009 0010 0011 0012 0014 0017 0018 0019 0020 0021 0022 0023 0024 0026 0027 0029 0030 0031 0032 0034 0035 0036 0037 0038 0039 0040 0042 0043 0044 0046 0047 0050 0051 0053 0054 0056 0059 0061 0062 0063 0066 0068 0069 0076 0077 0080 0084 0085 0088 use 'Ctrl' to select several databases Select Remote Interfaces [All Interfaces] SWISS-2DPAGE World-2DPAGE Portal Exclude local DBs has only effect if a remote interface is selected

Searching in 'World-2DPAGE Repository [0014]' for entry matching: SAM50_RAT World-2DPAGE Repository (0014):  SAM50_RAT SAM50_RAT General information about the entry View entry in simple text format Entry name SAM50_RAT Primary accession number Q6AXV4 integrated into World-2DPAGE Repository (0014) on  October 13, 2008 (release 1) 2D Annotations were last modified on June 1, 2011 (version 3) General Annotations were last modified on  November 25, 2011 (version 2) Name and origin of the protein Description RecName: Full=Sorting and assembly machinery component 50 homolog;. Gene name Name=Samm50 Annotated species Rattus norvegicus (Rat) [TaxID: 10116] Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus. References [1]   2D-PAGE GEL CHARACTERIZATION DOI=10.1002/pmic.200900680; Maurya D.K., Sundaram C.S., Bhargava P. ''Proteome profile of whole cerebellum of the mature rat'' Proteomics 10(23):4311-4319 (2010) 2D PAGE maps for identified proteins How to interpret a protein RAT_CEREBELLUM_21D {Proteome of 21 days old rat cerebellum} Rattus norvegicus (Rat) Tissue: Cerebellum   map experimental info   RAT_CEREBELLUM_21D MAP LOCATIONS: SPOT 2856: pI=6.44; Mw=58000   [identification data] IDENTIFICATION: SPOT 2856: SeqCov=29%. MascotPMF=77 [1]. MAPPING (identification): SPOT 2856: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1]. Copyright Data from Dr. Purnima Bhargava, Centre for Cellular and Molecular Biology, India Cross-references PRIDE 10017. UniProtKB/Swiss-Prot Q6AXV4; SAM50_RAT. 2D PAGE maps for identified proteins How to interpret a protein map You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw. Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly. Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed. External data extracted from UniProtKB/Swiss-Prot Extracted from UniProtKB/Swiss-Prot, release: 2011_11 Entry name SAM50_RAT Primary accession number Q6AXV4 Sequence was last modified on  September 13, 2004 (version 1) Annotations were last modified on  September 21, 2011 (version 52) Name and origin of the protein Description RecName: Full=Sorting and assembly machinery component 50 homolog; Gene name Name=Samm50 Encoded on Name=Samm50 Keywords Complete proteome; Cytoplasm; Membrane; Mitochondrion; Mitochondrion outer membrane; Reference proteome; Transmembrane; Transmembrane beta strand. Copyright Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License Cross-references EMBL BC079302; AAH79302.1; -; mRNA IPI IPI00372941; -; . RefSeq NP_001004241.1; NM_001004241.1; . UniGene Rn.12611; -; . ProteinModelPortal Q6AXV4; -; . STRING Q6AXV4; -; . PhosphoSite Q6AXV4; -; . PRIDE Q6AXV4; -; . Ensembl ENSRNOT00000016520; ENSRNOP00000016520; ENSRNOG00000011952; . GeneID 300111; -; . KEGG rno:300111; -; . NMPDR fig|10116.3.peg.27518; -; . UCSC NM_001004241; rat; . CTD 25813; -; . RGD 1303219; Samm50; . eggNOG roNOG05501; -; . GeneTree ENSGT00390000011355; -; . HOVERGEN HBG054614; -; . InParanoid Q6AXV4; -; . OrthoDB EOG4H72BD; -; . PhylomeDB Q6AXV4; -; . NextBio 646352; -; . ArrayExpress Q6AXV4; -; . Genevestigator Q6AXV4; -; . GO GO:0016021; C:integral to membrane; IEA:UniProtKB-KW; . InterPro IPR000184; Bac_surfAg_D15; . Pfam PF01103; Bac_surface_Ag; 1; . World-2DPAGE Repository (search AC)