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World-2DPAGE Repository
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Searching in 'World-2DPAGE Repository [0014]' for entry
matching:
SAM50_RAT
World-2DPAGE Repository
(0014):
SAM50_RAT
SAM50_RAT
General information about the entry
View entry in simple text format
Entry name
SAM50_RAT
Primary accession number
Q6AXV4
integrated into World-2DPAGE Repository (0014) on
October 13, 2008 (release 1)
2D Annotations were last modified on
June 1, 2011 (version 3)
General Annotations were last modified on
November 25, 2011 (version 2)
Name and origin of the protein
Description
RecName: Full=Sorting and assembly machinery component 50 homolog;.
Gene name
Name=Samm50
Annotated species
Rattus norvegicus (Rat) [TaxID:
10116
]
Taxonomy
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
References
[1]
2D-PAGE GEL CHARACTERIZATION
DOI=
10.1002/pmic.200900680
;
Maurya D.K., Sundaram C.S., Bhargava P.
''Proteome profile of whole cerebellum of the mature rat''
Proteomics 10(23):4311-4319 (2010)
2D PAGE maps for identified proteins
How to interpret a protein
RAT_CEREBELLUM_21D
{Proteome of 21 days old rat cerebellum}
Rattus norvegicus (Rat)
Tissue: Cerebellum
map experimental info
RAT_CEREBELLUM_21D
MAP LOCATIONS:
SPOT 2856
:
pI=6.44; Mw=58000
[identification data]
IDENTIFICATION:
SPOT 2856: SeqCov=29%. MascotPMF=77 [
1
].
MAPPING (identification):
SPOT
2856
:
Peptide mass fingerprinting
[
1
];
Tandem mass spectrometry
[
1
].
Copyright
Data from Dr. Purnima Bhargava, Centre for Cellular and Molecular Biology, India
Cross-references
PRIDE
10017.
UniProtKB/Swiss-Prot
Q6AXV4; SAM50_RAT.
2D PAGE maps for identified proteins
How to interpret a protein map
You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
Warning 1
: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
Warning 2
: the 2D PAGE map is built on demand. This may take some few seconds to be computed.
External data extracted from
UniProtKB/Swiss-Prot
Extracted from
UniProtKB/Swiss-Prot
, release:
2011_11
Entry name
SAM50_RAT
Primary accession number
Q6AXV4
Sequence was last modified on
September 13, 2004 (version 1)
Annotations were last modified on
September 21, 2011 (version 52)
Name and origin of the protein
Description
RecName: Full=Sorting and assembly machinery component 50 homolog;
Gene name
Name=Samm50
Encoded on
Name=Samm50
Keywords
Complete proteome
;
Cytoplasm
;
Membrane
;
Mitochondrion
;
Mitochondrion outer membrane
;
Reference proteome
;
Transmembrane
;
Transmembrane beta strand
.
Copyright
Copyrighted by the UniProt Consortium, see
https://www.uniprot.org/help/license
. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBL
BC079302; AAH79302.1
; -; mRNA
IPI
IPI00372941; -
; .
RefSeq
NP_001004241.1; NM_001004241.1
; .
UniGene
Rn.12611; -
; .
ProteinModelPortal
Q6AXV4; -
; .
STRING
Q6AXV4; -
; .
PhosphoSite
Q6AXV4; -
; .
PRIDE
Q6AXV4; -
; .
Ensembl
ENSRNOT00000016520; ENSRNOP00000016520
; ENSRNOG00000011952; .
GeneID
300111; -
; .
KEGG
rno:300111; -
; .
NMPDR
fig|10116.3.peg.27518; -
; .
UCSC
NM_001004241; rat
; .
CTD
25813; -
; .
RGD
1303219; Samm50
; .
eggNOG
roNOG05501; -
; .
GeneTree
ENSGT00390000011355; -
; .
HOVERGEN
HBG054614; -
; .
InParanoid
Q6AXV4; -
; .
OrthoDB
EOG4H72BD; -
; .
PhylomeDB
Q6AXV4; -
; .
NextBio
646352; -
; .
ArrayExpress
Q6AXV4; -
; .
Genevestigator
Q6AXV4; -
; .
GO
GO:0016021; C:integral to membrane
; IEA:UniProtKB-KW; .
InterPro
IPR000184; Bac_surfAg_D15
; .
Pfam
PF01103; Bac_surface_Ag
; 1; .
World-2DPAGE Repository (search AC)
Database constructed and maintained by
SIB
, using the
Make2D-DB II
package (
ver. 3.10.2
) from the
World-2DPAGE Constellation
of the
ExPASy web server