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Searching in 'World-2DPAGE Repository [0030]' for entry matching: SCFD1_RAT




World-2DPAGE Repository (0030):  SCFD1_RAT

SCFD1_RAT


General information about the entry
View entry in simple text format
Entry nameSCFD1_RAT
Primary accession numberQ62991
integrated into World-2DPAGE Repository (0030) on November 9, 2010 (release 1)
2D Annotations were last modified onJune 21, 2011 (version 2)
General Annotations were last modified on November 23, 2011 (version 2)
Name and origin of the protein
DescriptionRecName: Full=Sec1 family domain-containing protein 1; AltName: Full=SLY1 homolog; Short=Sly1p; AltName: Full=Syntaxin-binding protein 1-like 2; AltName: Full=Vesicle transport-related protein Ra410;.
Gene nameName=Scfd1
Synonyms=Ra410, Sly1, Stxbp1l2
Annotated speciesRattus norvegicus (Rat) [TaxID: 10116]
TaxonomyEukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
References
[1]   2D-PAGE GEL CHARACTERIZATION
DOI=10.1002/pmic.201000006;
D'Hertog W., Maris M., Thorrez L., Waelkens E., Overbergh L., Mathieu C.
''Two-dimensional gel proteome reference map of INS-1E cells''
Proteomics 11(7):1365-1369 (2011)
2D PAGE maps for identified proteins
How to interpret a protein

RAT_INS1E_4-7 {INS-1E cell line, a model rat cell line for pancreatic beta cells, PH4-7}
Rattus norvegicus (Rat)
RAT_INS1E_4-7
  map experimental info 		 
RAT_INS1E_4-7

MAP LOCATIONS:
pI=6.23; Mw=76404  [identification data]

IDENTIFICATION: SPOT 3045: Mascot protein score=57. Number of peptides=5 [1].
MAPPING (identification):
SPOT 3045: Tandem mass spectrometry [1].

Copyright
Data from Dr. Wannes D'Hertog, Catholic University Leuven, Belgium
Cross-references
UniProtKB/Swiss-ProtQ62991; SCFD1_RAT.
World-2DPAGE RepositoryQ62991; SCFD1_RAT.



2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_11
Entry nameSCFD1_RAT
Primary accession numberQ62991
Secondary accession number(s) Q62843
Sequence was last modified on November 1, 1996 (version 1)
Annotations were last modified on September 21, 2011 (version 81)
Name and origin of the protein
DescriptionRecName: Full=Sec1 family domain-containing protein 1; AltName: Full=SLY1 homolog; Short=Sly1p; AltName: Full=Syntaxin-binding protein 1-like 2; AltName: Full=Vesicle transport-related protein Ra410;
Gene nameName=Scfd1
Synonyms=Ra410, Sly1, Stxbp1l2
Encoded onName=Scfd1; Synonyms=Ra410, Sly1, Stxbp1l2
Keywords3D-structure; Complete proteome; Cytoplasm; Direct protein sequencing; Endoplasmic reticulum; ER-Golgi transport; Golgi apparatus; Membrane; Phosphoprotein; Protein transport; Reference proteome; Transport.
Copyright
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBLU57687; AAC52636.1; -; mRNA
EMBLD79221; BAA24276.1; -; mRNA
EMBLU35364; AAB08009.1; ALT_INIT; mRNA
IPIIPI00210389; -; .
PIRJC4674; JC4674; .
RefSeqNP_062237.1; NM_019364.1; .
UniGeneRn.10761; -; .
PDB1Y9J; NMR; -; A=2-147
PDBsum1Y9J; -; .
ProteinModelPortalQ62991; -; .
SMRQ62991; 8-147; .
IntActQ62991; 1; .
STRINGQ62991; -; .
PRIDEQ62991; -; .
EnsemblENSRNOT00000040548; ENSRNOP00000039132; ENSRNOG00000031203; .
GeneID54350; -; .
KEGGrno:54350; -; .
UCSCNM_019364; rat; .
CTD23256; -; .
RGD619828; Scfd1; .
eggNOGroNOG10976; -; .
GeneTreeENSGT00550000074845; -; .
HOVERGENHBG061536; -; .
InParanoidQ62991; -; .
OMATTKPMGL; -; .
OrthoDBEOG4BP1B8; -; .
PhylomeDBQ62991; -; .
NextBio611032; -; .
ArrayExpressQ62991; -; .
GenevestigatorQ62991; -; .
GermOnlineENSRNOG00000031203; Rattus norvegicus; .
GOGO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell; .
GOGO:0032580; C:Golgi cisterna membrane; IEA:UniProtKB-SubCell; .
GOGO:0005798; C:Golgi-associated vesicle; IDA:RGD; .
GOGO:0005886; C:plasma membrane; IDA:RGD; .
GOGO:0047485; F:protein N-terminus binding; IPI:UniProtKB; .
GOGO:0051535; F:syntaxin-5 binding; IDA:RGD; .
GOGO:0006888; P:ER to Golgi vesicle-mediated transport; TAS:RGD; .
GOGO:0006892; P:post-Golgi vesicle-mediated transport; IDA:RGD; .
GOGO:0015031; P:protein transport; IEA:UniProtKB-KW; .
GOGO:0060628; P:regulation of ER to Golgi vesicle-mediated transport; IMP:RGD; .
GOGO:0001666; P:response to hypoxia; IEP:RGD; .
GOGO:0006890; P:retrograde vesicle-mediated transport; Golgi to ER; IMP:UniProtKB
GOGO:0006904; P:vesicle docking involved in exocytosis; IEA:InterPro; .
InterProIPR001619; Sec1-like; .
PANTHERPTHR11679; Sec1-like; 1; .
PfamPF00995; Sec1; 1; .
SUPFAMSSF56815; Sec1-like; 1; .


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Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the ExPASy web server