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World-2DPAGE Repository  Search by  [accession number]  [description, ID or gene]  [author names]  [spot ID / serial number]  [identification methods]  [pI / Mw range]  [combined fields]  Maps  [experimental info]  [protein list]  [graphical interface]      Databases 0001 0002 0003 0004 0005 0006 0007 0008 0009 0010 0011 0012 0014 0017 0018 0019 0020 0021 0022 0023 0024 0026 0027 0029 0030 0031 0032 0034 0035 0036 0037 0038 0039 0040 0042 0043 0044 0046 0047 0050 0051 0053 0054 0056 0059 0061 0062 0063 0066 0068 0069 0076 0077 0080 0084 0085 0088 use 'Ctrl' to select several databases Select Remote Interfaces [All Interfaces] SWISS-2DPAGE World-2DPAGE Portal Exclude local DBs has only effect if a remote interface is selected

Searching in 'World-2DPAGE Repository [0030]' for entry matching: SCFD1_RAT World-2DPAGE Repository (0030):  SCFD1_RAT SCFD1_RAT General information about the entry View entry in simple text format Entry name SCFD1_RAT Primary accession number Q62991 integrated into World-2DPAGE Repository (0030) on  November 9, 2010 (release 1) 2D Annotations were last modified on June 21, 2011 (version 2) General Annotations were last modified on  November 23, 2011 (version 2) Name and origin of the protein Description RecName: Full=Sec1 family domain-containing protein 1; AltName: Full=SLY1 homolog; Short=Sly1p; AltName: Full=Syntaxin-binding protein 1-like 2; AltName: Full=Vesicle transport-related protein Ra410;. Gene name Name=Scfd1 Synonyms=Ra410, Sly1, Stxbp1l2 Annotated species Rattus norvegicus (Rat) [TaxID: 10116] Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus. References [1]   2D-PAGE GEL CHARACTERIZATION DOI=10.1002/pmic.201000006; D'Hertog W., Maris M., Thorrez L., Waelkens E., Overbergh L., Mathieu C. ''Two-dimensional gel proteome reference map of INS-1E cells'' Proteomics 11(7):1365-1369 (2011) 2D PAGE maps for identified proteins How to interpret a protein RAT_INS1E_4-7 {INS-1E cell line, a model rat cell line for pancreatic beta cells, PH4-7} Rattus norvegicus (Rat)   map experimental info   RAT_INS1E_4-7 MAP LOCATIONS: SPOT 3045: pI=6.23; Mw=76404   [identification data] IDENTIFICATION: SPOT 3045: Mascot protein score=57. Number of peptides=5 [1]. MAPPING (identification): SPOT 3045: Tandem mass spectrometry [1]. Copyright Data from Dr. Wannes D'Hertog, Catholic University Leuven, Belgium Cross-references UniProtKB/Swiss-Prot Q62991; SCFD1_RAT. World-2DPAGE Repository Q62991; SCFD1_RAT. 2D PAGE maps for identified proteins How to interpret a protein map You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw. Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly. Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed. External data extracted from UniProtKB/Swiss-Prot Extracted from UniProtKB/Swiss-Prot, release: 2011_11 Entry name SCFD1_RAT Primary accession number Q62991 Secondary accession number(s) Q62843 Sequence was last modified on  November 1, 1996 (version 1) Annotations were last modified on  September 21, 2011 (version 81) Name and origin of the protein Description RecName: Full=Sec1 family domain-containing protein 1; AltName: Full=SLY1 homolog; Short=Sly1p; AltName: Full=Syntaxin-binding protein 1-like 2; AltName: Full=Vesicle transport-related protein Ra410; Gene name Name=Scfd1 Synonyms=Ra410, Sly1, Stxbp1l2 Encoded on Name=Scfd1; Synonyms=Ra410, Sly1, Stxbp1l2 Keywords 3D-structure; Complete proteome; Cytoplasm; Direct protein sequencing; Endoplasmic reticulum; ER-Golgi transport; Golgi apparatus; Membrane; Phosphoprotein; Protein transport; Reference proteome; Transport. Copyright Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License Cross-references EMBL U57687; AAC52636.1; -; mRNA EMBL D79221; BAA24276.1; -; mRNA EMBL U35364; AAB08009.1; ALT_INIT; mRNA IPI IPI00210389; -; . PIR JC4674; JC4674; . RefSeq NP_062237.1; NM_019364.1; . UniGene Rn.10761; -; . PDB 1Y9J; NMR; -; A=2-147 PDBsum 1Y9J; -; . ProteinModelPortal Q62991; -; . SMR Q62991; 8-147; . IntAct Q62991; 1; . STRING Q62991; -; . PRIDE Q62991; -; . Ensembl ENSRNOT00000040548; ENSRNOP00000039132; ENSRNOG00000031203; . GeneID 54350; -; . KEGG rno:54350; -; . UCSC NM_019364; rat; . CTD 23256; -; . RGD 619828; Scfd1; . eggNOG roNOG10976; -; . GeneTree ENSGT00550000074845; -; . HOVERGEN HBG061536; -; . InParanoid Q62991; -; . OMA TTKPMGL; -; . OrthoDB EOG4BP1B8; -; . PhylomeDB Q62991; -; . NextBio 611032; -; . ArrayExpress Q62991; -; . Genevestigator Q62991; -; . GermOnline ENSRNOG00000031203; Rattus norvegicus; . GO GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell; . GO GO:0032580; C:Golgi cisterna membrane; IEA:UniProtKB-SubCell; . GO GO:0005798; C:Golgi-associated vesicle; IDA:RGD; . GO GO:0005886; C:plasma membrane; IDA:RGD; . GO GO:0047485; F:protein N-terminus binding; IPI:UniProtKB; . GO GO:0051535; F:syntaxin-5 binding; IDA:RGD; . GO GO:0006888; P:ER to Golgi vesicle-mediated transport; TAS:RGD; . GO GO:0006892; P:post-Golgi vesicle-mediated transport; IDA:RGD; . GO GO:0015031; P:protein transport; IEA:UniProtKB-KW; . GO GO:0060628; P:regulation of ER to Golgi vesicle-mediated transport; IMP:RGD; . GO GO:0001666; P:response to hypoxia; IEP:RGD; . GO GO:0006890; P:retrograde vesicle-mediated transport; Golgi to ER; IMP:UniProtKB GO GO:0006904; P:vesicle docking involved in exocytosis; IEA:InterPro; . InterPro IPR001619; Sec1-like; . PANTHER PTHR11679; Sec1-like; 1; . Pfam PF00995; Sec1; 1; . SUPFAM SSF56815; Sec1-like; 1; . World-2DPAGE Repository (search AC)