Attention: World-2DPAGE is no longer maintained. Previously submitted data can still be queried at World-2DPAGE Repository.

World-2DPAGE Repository  Search by  [accession number]  [description, ID or gene]  [author names]  [spot ID / serial number]  [identification methods]  [pI / Mw range]  [combined fields]  Maps  [experimental info]  [protein list]  [graphical interface]      Databases 0001 0002 0003 0004 0005 0006 0007 0008 0009 0010 0011 0012 0014 0017 0018 0019 0020 0021 0022 0023 0024 0026 0027 0029 0030 0031 0032 0034 0035 0036 0037 0038 0039 0040 0042 0043 0044 0046 0047 0050 0051 0053 0054 0056 0059 0061 0062 0063 0066 0068 0069 0076 0077 0080 0084 0085 0088 use 'Ctrl' to select several databases Select Remote Interfaces [All Interfaces] SWISS-2DPAGE World-2DPAGE Portal Exclude local DBs has only effect if a remote interface is selected

Searching in 'World-2DPAGE Repository [0030]' for entry matching: SEC13_RAT World-2DPAGE Repository (0030):  SEC13_RAT SEC13_RAT General information about the entry View entry in simple text format Entry name SEC13_RAT Primary accession number Q5XFW8 integrated into World-2DPAGE Repository (0030) on  November 9, 2010 (release 1) 2D Annotations were last modified on June 21, 2011 (version 2) General Annotations were last modified on  November 23, 2011 (version 2) Name and origin of the protein Description RecName: Full=Protein SEC13 homolog; AltName: Full=SEC13-like protein 1;. Gene name Name=Sec13 Synonyms=Sec13l1 Annotated species Rattus norvegicus (Rat) [TaxID: 10116] Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus. References [1]   2D-PAGE GEL CHARACTERIZATION DOI=10.1002/pmic.201000006; D'Hertog W., Maris M., Thorrez L., Waelkens E., Overbergh L., Mathieu C. ''Two-dimensional gel proteome reference map of INS-1E cells'' Proteomics 11(7):1365-1369 (2011) 2D PAGE maps for identified proteins How to interpret a protein RAT_INS1E_4-7 {INS-1E cell line, a model rat cell line for pancreatic beta cells, PH4-7} Rattus norvegicus (Rat)   map experimental info   RAT_INS1E_4-7 MAP LOCATIONS: SPOT 1588: pI=4.99; Mw=43510   [identification data] IDENTIFICATION: SPOT 1588: Mascot protein score=29. Number of peptides=1 [1]. MAPPING (identification): SPOT 1588: Tandem mass spectrometry [1]. Copyright Data from Dr. Wannes D'Hertog, Catholic University Leuven, Belgium Cross-references UniProtKB/Swiss-Prot Q5XFW8; SEC13_RAT. World-2DPAGE Repository Q5XFW8; SEC13_RAT. 2D PAGE maps for identified proteins How to interpret a protein map You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw. Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly. Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed. External data extracted from UniProtKB/Swiss-Prot Extracted from UniProtKB/Swiss-Prot, release: 2011_11 Entry name SEC13_RAT Primary accession number Q5XFW8 Sequence was last modified on  November 23, 2004 (version 1) Annotations were last modified on  November 16, 2011 (version 64) Name and origin of the protein Description RecName: Full=Protein SEC13 homolog; AltName: Full=SEC13-like protein 1; Gene name Name=Sec13 Synonyms=Sec13l1 Encoded on Name=Sec13; Synonyms=Sec13l1 Keywords Acetylation; Complete proteome; Cytoplasmic vesicle; Endoplasmic reticulum; ER-Golgi transport; Membrane; mRNA transport; Nuclear pore complex; Nucleus; Phosphoprotein; Protein transport; Reference proteome; Repeat; Translocation; Transport; WD repeat. Copyright Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License Cross-references EMBL BC084705; AAH84705.1; -; mRNA IPI IPI00364566; -; . RefSeq NP_001006979.1; NM_001006978.1; . UniGene Rn.1553; -; . ProteinModelPortal Q5XFW8; -; . SMR Q5XFW8; 14-304; . STRING Q5XFW8; -; . PRIDE Q5XFW8; -; . Ensembl ENSRNOT00000014377; ENSRNOP00000014377; ENSRNOG00000010628; . GeneID 297522; -; . KEGG rno:297522; -; . NMPDR fig|10116.3.peg.22000; -; . UCSC NM_001006978; rat; . CTD 6396; -; . RGD 1359555; Sec13; . eggNOG roNOG13674; -; . GeneTree ENSGT00550000075049; -; . HOVERGEN HBG057343; -; . InParanoid Q5XFW8; -; . OrthoDB EOG40P471; -; . PhylomeDB Q5XFW8; -; . NextBio 642376; -; . ArrayExpress Q5XFW8; -; . Genevestigator Q5XFW8; -; . GO GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell; . GO GO:0012507; C:ER to Golgi transport vesicle membrane; IEA:UniProtKB-SubCell; . GO GO:0031080; C:Nup107-160 complex; ISS:UniProtKB; . GO GO:0006888; P:ER to Golgi vesicle-mediated transport; IDA:MGI; . GO GO:0051028; P:mRNA transport; IEA:UniProtKB-KW; . GO GO:0015031; P:protein transport; IEA:UniProtKB-KW; . InterPro IPR015943; WD40/YVTN_repeat-like_dom; . InterPro IPR001680; WD40_repeat; . InterPro IPR011046; WD40_repeat-like_dom; . InterPro IPR019782; WD40_repeat_2; . InterPro IPR017986; WD40_repeat_dom; . InterPro IPR019781; WD40_repeat_subgr; . Gene3D G3DSA:2.130.10.10; WD40/YVTN_repeat-like; 1; . KO K14004; -; . Pfam PF00400; WD40; 6; . SMART SM00320; WD40; 6; . SUPFAM SSF50978; WD40_like; 1; . PROSITE PS00678; WD_REPEATS_1; FALSE_NEG; . PROSITE PS50082; WD_REPEATS_2; 3; . PROSITE PS50294; WD_REPEATS_REGION; 1; . World-2DPAGE Repository (search AC)