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Searching in 'World-2DPAGE Repository [0004]' for entry matching: SNP25_RAT

World-2DPAGE Repository (0004):  SNP25_RAT


General information about the entry
View entry in simple text format
Entry nameSNP25_RAT
Primary accession numberP60881
integrated into World-2DPAGE Repository (0004) on October 13, 2008 (release 1)
2D Annotations were last modified onMay 18, 2011 (version 2)
General Annotations were last modified on December 22, 2011 (version 2)
Name and origin of the protein
DescriptionRecName: Full=Synaptosomal-associated protein 25; Short=SNAP-25; AltName: Full=Super protein; Short=SUP; AltName: Full=Synaptosomal-associated 25 kDa protein;.
Gene nameName=Snap25
Annotated speciesRattus norvegicus (Rat) [TaxID: 10116]
TaxonomyEukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
PubMed=19343716; DOI=10.1002/pmic.200800664; [NCBI, EBI, Israel, Japan]
Maurya D.K., Sundaram C.S., Bhargava P.
''Proteome profile of the mature rat olfactory bulb''
Proteomics 9(1):2593-2599 (2009)
2D PAGE maps for identified proteins
How to interpret a protein

OB21DSUB {2-DE gel for Olfactory bulb proteome}
Rattus norvegicus (Rat)
Tissue: Olfactory bulb
  map experimental info

pI=4.66; Mw=26000  [identification data]

MAPPING (identification):
SPOT 638: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1].

Data from Dr. Purnima Bhargava, Centre for Cellular and Molecular Biology, India
UniProtKB/Swiss-ProtP60881; SNP25_RAT.

2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.

External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_12
Entry nameSNP25_RAT
Primary accession numberP60881
Secondary accession number(s) P13795 P36974 P70557 P70558 Q8IXK3 Q96FM2 Q9BR45
Sequence was last modified on April 13, 2004 (version 1)
Annotations were last modified on December 14, 2011 (version 92)
Name and origin of the protein
DescriptionRecName: Full=Synaptosomal-associated protein 25; Short=SNAP-25; AltName: Full=Super protein; Short=SUP; AltName: Full=Synaptosomal-associated 25 kDa protein;
Gene nameName=Snap25
Encoded onName=Snap25; Synonyms=Snap
Keywords3D-structure; Alternative splicing; Cell junction; Cell membrane; Coiled coil; Complete proteome; Cytoplasm; Direct protein sequencing; Lipoprotein; Membrane; Palmitate; Phosphoprotein; Reference proteome; Repeat; Synapse; Synaptosome.
Copyrighted by the UniProt Consortium, see Distributed under the Creative Commons Attribution-NoDerivs License
EMBLAB003991; BAA20151.1; -; mRNA
EMBLAB003992; BAA20152.1; -; mRNA
EMBLAF245227; AAF81202.1; -; mRNA
EMBLU56262; AAA99826.1; -; mRNA
EMBLBC087699; AAH87699.1; -; mRNA
EMBLU56261; AAA99825.1; -; mRNA
IPIIPI00204644; -; .
IPIIPI00231420; -; .
RefSeqNP_112253.1; NM_030991.2; .
UniGeneRn.107689; -; .
PDB1JTH; X-ray; 2.00 A; A/C=1-82
PDB1N7S; X-ray; 1.45 A; C=7-83
D=141-204PDB; 1SFC; X-ray; 2.40 A
C/G/K=1-83D/H/L=120-206; PDB; 1URQ; X-ray
2.00 AC=7-83; D=142-204; PDB; 3HD7
X-ray3.40 A; C/G=7-83; D/H=141-204; PDB
3IPDX-ray; 4.80 A; C/G=7-83; D/H=141-204
PDBsum1JTH; -; .
PDBsum1N7S; -; .
PDBsum1SFC; -; .
PDBsum1URQ; -; .
PDBsum3HD7; -; .
PDBsum3IPD; -; .
ProteinModelPortalP60881; -; .
SMRP60881; 10-78; 131-204; .
DisProtDP00068; -; .
DIPDIP-29205N; -; .
IntActP60881; 6; .
MINTMINT-95953; -; .
STRINGP60881; -; .
PhosphoSiteP60881; -; .
World-2DPAGE0004:P60881; -; .
PRIDEP60881; -; .
GeneID25012; -; .
KEGGrno:25012; -; .
CTD6616; -; .
RGD3728; Snap25; .
eggNOGmaNOG08467; -; .
GeneTreeENSGT00390000012186; -; .
HOVERGENHBG056971; -; .
InParanoidP60881; -; .
NextBio605093; -; .
PMAP-CutDBP60881; -; .
ArrayExpressP60881; -; .
GenevestigatorP60881; -; .
GermOnlineENSRNOG00000006037; Rattus norvegicus; .
GOGO:0015629; C:actin cytoskeleton; IDA:RGD; .
GOGO:0044295; C:axonal growth cone; IDA:MGI; .
GOGO:0030054; C:cell junction; IEA:UniProtKB-KW; .
GOGO:0005768; C:endosome; IDA:RGD; .
GOGO:0030175; C:filopodium; IDA:RGD; .
GOGO:0030027; C:lamellipodium; IDA:RGD; .
GOGO:0045121; C:membrane raft; IDA:RGD; .
GOGO:0043025; C:neuronal cell body; IDA:RGD; .
GOGO:0048471; C:perinuclear region of cytoplasm; IEA:UniProtKB-SubCell; .
GOGO:0005625; C:soluble fraction; IDA:RGD; .
GOGO:0045202; C:synapse; IEA:UniProtKB-KW; .
GOGO:0070044; C:synaptobrevin 2-SNAP-25-syntaxin-1a complex; IDA:MGI; .
GOGO:0070032; C:synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex; IDA:MGI; .
GOGO:0019717; C:synaptosome; IDA:RGD; .
GOGO:0008076; C:voltage-gated potassium channel complex; IDA:RGD; .
GOGO:0017022; F:myosin binding; IPI:RGD; .
GOGO:0019904; F:protein domain specific binding; IPI:RGD; .
GOGO:0047485; F:protein N-terminus binding; IPI:RGD; .
GOGO:0005484; F:SNAP receptor activity; TAS:RGD; .
GOGO:0017075; F:syntaxin-1 binding; IDA:MGI; .
GOGO:0005249; F:voltage-gated potassium channel activity; IDA:RGD; .
GOGO:0007409; P:axonogenesis; IEP:RGD; .
GOGO:0048791; P:calcium ion-dependent exocytosis of neurotransmitter; IDA:RGD; .
GOGO:0016197; P:endosome transport; IDA:RGD; .
GOGO:0006887; P:exocytosis; TAS:RGD; .
GOGO:0030252; P:growth hormone secretion; IEP:RGD; .
GOGO:0007616; P:long-term memory; IMP:RGD; .
GOGO:0032024; P:positive regulation of insulin secretion; IEP:RGD; .
GOGO:0051963; P:regulation of synapse assembly; IEP:RGD; .
GOGO:0030431; P:sleep; IDA:RGD; .
InterProIPR000928; SNAP-25; .
InterProIPR000727; T_SNARE_dom; .
KOK08508; -; .
PfamPF00835; SNAP-25; 1; .
PfamPF05739; SNARE; 1; .
SMARTSM00397; t_SNARE; 2; .

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Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the Expasy web server