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Searching in 'World-2DPAGE Repository [0022]' for entry matching: SODC_RAT




World-2DPAGE Repository (0022):  SODC_RAT

SODC_RAT


General information about the entry
View entry in simple text format
Entry nameSODC_RAT
Primary accession numberP07632
integrated into World-2DPAGE Repository (0022) on May 7, 2010 (release 1)
2D Annotations were last modified onJune 22, 2011 (version 2)
General Annotations were last modified on November 24, 2011 (version 2)
Name and origin of the protein
DescriptionRecName: Full=Superoxide dismutase [Cu-Zn]; EC=1.15.1.1;.
Gene nameName=Sod1
Annotated speciesRattus [TaxID: 10114]
TaxonomyEukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae.
References
[1]   2D-PAGE GEL CHARACTERIZATION
DOI=10.1002/pmic.201000593;
Burniston J.G., Kenyani J., Wastling J.M., Burant C.F., Qi N.R., Koch L.G., Britton S.L.
''Proteomic analysis reveals perturbed energy metabolism and elevated oxidative stress in hearts of rats with inborn low aerobic capacity''
Proteomics 11(16):3369-3379 (2011)
2D PAGE maps for identified proteins
How to interpret a protein

HCR_LCR_HEART {HCR LCR Cardiac Map}
Rattus
Tissue: Heart
HCR_LCR_HEART
  map experimental info 		 
HCR_LCR_HEART

MAP LOCATIONS:
pI=5.88; Mw=16073  [identification data]

IDENTIFICATION: SPOT 628: SeqCov=35.7%. Peptides MS=7/20. Mascot PMF Score=64 [1].
PEPTIDE EVIDENCE: SPOT 628: 93-DGVANVSIEDR-103 (64) / 104-VISLSGEHSIIGR-116 (103) / 11-GDGPVQGVIHFEQK-24 (110) [1].
MAPPING (identification):
SPOT 628: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1].

Copyright
Data from Dr. Jatin Burniston, Liverpool John Moores University, UK
Cross-references
UniProtKB/Swiss-ProtP07632; SODC_RAT.



2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_11
Entry nameSODC_RAT
Primary accession numberP07632
Sequence was last modified on January 23, 2007 (version 2)
Annotations were last modified on November 16, 2011 (version 118)
Name and origin of the protein
DescriptionRecName: Full=Superoxide dismutase [Cu-Zn]; EC=1.15.1.1;
Gene nameName=Sod1
Encoded onName=Sod1
KeywordsAcetylation; Antioxidant; Complete proteome; Copper; Cytoplasm; Direct protein sequencing; Disulfide bond; Metal-binding; Oxidoreductase; Phosphoprotein; Reference proteome; Zinc.
Copyright
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBLY00404; CAA68465.1; -; mRNA
EMBLM25157; AAA42160.1; ALT_INIT; mRNA
EMBLX05634; CAA29121.1; -; mRNA
EMBLZ21917; CAA79925.1; ALT_INIT; Genomic_DNA
EMBLZ21918; CAA79925.1; JOINED; Genomic_DNA
EMBLZ21919; CAA79925.1; JOINED; Genomic_DNA
EMBLZ21920; CAA79925.1; JOINED; Genomic_DNA
EMBLBC082800; AAH82800.1; -; mRNA
IPIIPI00231643; -; .
PIRJC1192; JC1192; .
RefSeqNP_058746.1; NM_017050.1; .
UniGeneRn.6059; -; .
ProteinModelPortalP07632; -; .
SMRP07632; 2-154; .
MINTMINT-6612994; -; .
STRINGP07632; -; .
PhosphoSiteP07632; -; .
Rat-heart-2DPAGEP07632; -; .
PRIDEP07632; -; .
EnsemblENSRNOT00000002885; ENSRNOP00000002885; ENSRNOG00000002115; .
GeneID24786; -; .
KEGGrno:24786; -; .
UCSCNM_017050; rat; .
CTD6647; -; .
RGD3731; Sod1; .
eggNOGroNOG15892; -; .
HOVERGENHBG000062; -; .
OrthoDBEOG45HRZM; -; .
PhylomeDBP07632; -; .
NextBio604408; -; .
ArrayExpressP07632; -; .
GenevestigatorP07632; -; .
GermOnlineENSRNOG00000002115; Rattus norvegicus; .
GOGO:0031410; C:cytoplasmic vesicle; ISS:UniProtKB; .
GOGO:0005829; C:cytosol; ISS:UniProtKB; .
GOGO:0032839; C:dendrite cytoplasm; ISS:UniProtKB; .
GOGO:0031012; C:extracellular matrix; ISS:UniProtKB; .
GOGO:0005615; C:extracellular space; ISS:UniProtKB; .
GOGO:0005739; C:mitochondrion; ISS:UniProtKB; .
GOGO:0043025; C:neuronal cell body; ISS:UniProtKB; .
GOGO:0005634; C:nucleus; ISS:UniProtKB; .
GOGO:0005777; C:peroxisome; IDA:UniProtKB; .
GOGO:0043234; C:protein complex; ISS:UniProtKB; .
GOGO:0051087; F:chaperone binding; ISS:UniProtKB; .
GOGO:0005507; F:copper ion binding; ISS:UniProtKB; .
GOGO:0030346; F:protein phosphatase 2B binding; ISS:UniProtKB; .
GOGO:0004784; F:superoxide dismutase activity; ISS:UniProtKB; .
GOGO:0008270; F:zinc ion binding; ISS:UniProtKB; .
GOGO:0000187; P:activation of MAPK activity; ISS:UniProtKB; .
GOGO:0006916; P:anti-apoptosis; IMP:RGD; .
GOGO:0060088; P:auditory receptor cell stereocilium organization; ISS:UniProtKB; .
GOGO:0007569; P:cell aging; ISS:UniProtKB; .
GOGO:0006879; P:cellular iron ion homeostasis; ISS:UniProtKB; .
GOGO:0006309; P:DNA fragmentation involved in apoptotic nuclear change; ISS:UniProtKB; .
GOGO:0006302; P:double-strand break repair; ISS:UniProtKB; .
GOGO:0007566; P:embryo implantation; ISS:UniProtKB; .
GOGO:0006749; P:glutathione metabolic process; ISS:UniProtKB; .
GOGO:0060047; P:heart contraction; ISS:UniProtKB; .
GOGO:0050665; P:hydrogen peroxide biosynthetic process; ISS:UniProtKB; .
GOGO:0007626; P:locomotory behavior; ISS:UniProtKB; .
GOGO:0046716; P:muscle cell homeostasis; ISS:UniProtKB; .
GOGO:0002262; P:myeloid cell homeostasis; ISS:UniProtKB; .
GOGO:0045541; P:negative regulation of cholesterol biosynthetic process; ISS:UniProtKB; .
GOGO:0043524; P:negative regulation of neuron apoptosis; ISS:UniProtKB; .
GOGO:0060052; P:neurofilament cytoskeleton organization; ISS:UniProtKB; .
GOGO:0001541; P:ovarian follicle development; ISS:UniProtKB; .
GOGO:0032287; P:peripheral nervous system myelin maintenance; ISS:UniProtKB; .
GOGO:0001819; P:positive regulation of cytokine production; ISS:UniProtKB; .
GOGO:0008217; P:regulation of blood pressure; ISS:UniProtKB; .
GOGO:0051881; P:regulation of mitochondrial membrane potential; ISS:UniProtKB; .
GOGO:0040014; P:regulation of multicellular organism growth; ISS:UniProtKB; .
GOGO:0060087; P:relaxation of vascular smooth muscle; ISS:UniProtKB; .
GOGO:0019430; P:removal of superoxide radicals; ISS:UniProtKB; .
GOGO:0001975; P:response to amphetamine; IEP:RGD; .
GOGO:0048678; P:response to axon injury; ISS:UniProtKB; .
GOGO:0046688; P:response to copper ion; IMP:RGD; .
GOGO:0042493; P:response to drug; ISS:UniProtKB; .
GOGO:0045471; P:response to ethanol; ISS:UniProtKB; .
GOGO:0009408; P:response to heat; ISS:UniProtKB; .
GOGO:0042542; P:response to hydrogen peroxide; ISS:UniProtKB; .
GOGO:0031667; P:response to nutrient levels; IDA:RGD; .
GOGO:0001895; P:retina homeostasis; ISS:UniProtKB; .
GOGO:0007605; P:sensory perception of sound; ISS:UniProtKB; .
GOGO:0007283; P:spermatogenesis; ISS:UniProtKB; .
InterProIPR024134; SOD_Cu/Zn_/chaperones; .
InterProIPR018152; SOD_Cu/Zn_BS; .
InterProIPR001424; SOD_Cu_Zn_dom; .
Gene3DG3DSA:2.60.40.200; SOD_Cu_Zn; 1; .
KOK04565; -; .
PANTHERPTHR10003; SOD_Cu_Zn; 1; .
PfamPF00080; Sod_Cu; 1; .
PRINTSPR00068; CUZNDISMTASE; .
SUPFAMSSF49329; SOD_Cu_Zn; 1; .
PROSITEPS00087; SOD_CU_ZN_1; 1; .
PROSITEPS00332; SOD_CU_ZN_2; 1; .


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Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the Expasy web server