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Searching in 'World-2DPAGE Repository [0022]' for entry matching: SODM_RAT

World-2DPAGE Repository (0022):  SODM_RAT


General information about the entry
View entry in simple text format
Entry nameSODM_RAT
Primary accession numberP07895
integrated into World-2DPAGE Repository (0022) on May 7, 2010 (release 1)
2D Annotations were last modified onJune 22, 2011 (version 2)
General Annotations were last modified on November 24, 2011 (version 2)
Name and origin of the protein
DescriptionRecName: Full=Superoxide dismutase [Mn], mitochondrial; EC=; Flags: Precursor;.
Gene nameName=Sod2
Annotated speciesRattus [TaxID: 10114]
TaxonomyEukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae.
Burniston J.G., Kenyani J., Wastling J.M., Burant C.F., Qi N.R., Koch L.G., Britton S.L.
''Proteomic analysis reveals perturbed energy metabolism and elevated oxidative stress in hearts of rats with inborn low aerobic capacity''
Proteomics 11(16):3369-3379 (2011)
2D PAGE maps for identified proteins
How to interpret a protein

Tissue: Heart
  map experimental info

pI=8.96; Mw=24887  [identification data]
pI=8.96; Mw=24887  [identification data]

IDENTIFICATION: SPOT 317: SeqCov=29.3%. Peptides MS=6/20. Mascot PMF Score=45 [1]
SPOT 478: SeqCov=38.7%. Peptides MS=7/20. Mascot PMF Score=70 [1].
SPOT 478: 1-NVRPDYLK-1004.1405 (0) / 1-AIWNVINWENVSQR-1728.9043 (0) / 1-FNGGGHINHSIFWTNLSPK-2126.332 (0) [1].
MAPPING (identification):
SPOT 317: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1];
SPOT 478: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1].

Data from Dr. Jatin Burniston, Liverpool John Moores University, UK
UniProtKB/Swiss-ProtP07895; SODM_RAT.

2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.

External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_11
Entry nameSODM_RAT
Primary accession numberP07895
Sequence was last modified on May 1, 1992 (version 2)
Annotations were last modified on November 16, 2011 (version 110)
Name and origin of the protein
DescriptionRecName: Full=Superoxide dismutase [Mn], mitochondrial; EC=; Flags: Precursor;
Gene nameName=Sod2
Encoded onName=Sod2
KeywordsAcetylation; Complete proteome; Direct protein sequencing; Manganese; Metal-binding; Mitochondrion; Nitration; Oxidoreductase; Reference proteome; Transit peptide.
Copyrighted by the UniProt Consortium, see Distributed under the Creative Commons Attribution-NoDerivs License
EMBLY00497; CAA68549.1; -; mRNA
EMBLX56600; CAA39937.1; -; Genomic_DNA
EMBLBC070913; AAH70913.1; -; mRNA
IPIIPI00211593; -; .
PIRS21661; DSRTN; .
RefSeqNP_058747.1; NM_017051.2; .
UniGeneRn.10488; -; .
ProteinModelPortalP07895; -; .
SMRP07895; 25-222; .
IntActP07895; 1; .
STRINGP07895; -; .
PhosphoSiteP07895; -; .
Rat-heart-2DPAGEP07895; -; .
World-2DPAGE0004:P07895; -; .
PRIDEP07895; -; .
EnsemblENSRNOT00000025794; ENSRNOP00000025794; ENSRNOG00000019048; .
GeneID24787; -; .
KEGGrno:24787; -; .
UCSCNM_017051; rat; .
CTD6648; -; .
RGD3732; Sod2; .
eggNOGroNOG14008; -; .
GeneTreeENSGT00390000011877; -; .
HOVERGENHBG004451; -; .
InParanoidP07895; -; .
OrthoDBEOG4R503R; -; .
PhylomeDBP07895; -; .
NextBio604412; -; .
ArrayExpressP07895; -; .
GenevestigatorP07895; -; .
GermOnlineENSRNOG00000019048; Rattus norvegicus; .
GOGO:0042645; C:mitochondrial nucleoid; IDA:RGD; .
GOGO:0005625; C:soluble fraction; IDA:RGD; .
GOGO:0003677; F:DNA binding; IDA:RGD; .
GOGO:0042802; F:identical protein binding; IDA:RGD; .
GOGO:0030145; F:manganese ion binding; ISS:UniProtKB; .
GOGO:0019825; F:oxygen binding; IDA:RGD; .
GOGO:0004784; F:superoxide dismutase activity; ISS:UniProtKB; .
GOGO:0001315; P:age-dependent response to reactive oxygen species; ISS:UniProtKB; .
GOGO:0006916; P:anti-apoptosis; IMP:RGD; .
GOGO:0071361; P:cellular response to ethanol; IEP:RGD; .
GOGO:0050665; P:hydrogen peroxide biosynthetic process; IDA:RGD; .
GOGO:0006357; P:regulation of transcription from RNA polymerase II promoter; ISS:UniProtKB; .
GOGO:0019430; P:removal of superoxide radicals; IDA:RGD; .
GOGO:0046686; P:response to cadmium ion; IEP:RGD; .
GOGO:0042493; P:response to drug; IDA:RGD; .
GOGO:0051602; P:response to electrical stimulus; IEP:RGD; .
GOGO:0042542; P:response to hydrogen peroxide; IEP:RGD; .
GOGO:0001666; P:response to hypoxia; IEP:RGD; .
GOGO:0033591; P:response to L-ascorbic acid; IEP:RGD; .
GOGO:0032496; P:response to lipopolysaccharide; IEP:RGD; .
GOGO:0010042; P:response to manganese ion; IEP:RGD; .
GOGO:0010269; P:response to selenium ion; IEP:RGD; .
GOGO:0034021; P:response to silicon dioxide; IEP:RGD; .
GOGO:0010043; P:response to zinc ion; IEP:RGD; .
InterProIPR001189; Mn/Fe_SOD; .
InterProIPR019833; Mn/Fe_SOD_BS; .
InterProIPR019832; Mn/Fe_SOD_C; .
InterProIPR019831; Mn/Fe_SOD_N; .
KOK04564; -; .
PANTHERPTHR11404; SODismutase; 1; .
PfamPF02777; Sod_Fe_C; 1; .
PfamPF00081; Sod_Fe_N; 1; .
PIRSFPIRSF000349; SODismutase; 1; .
SUPFAMSSF46609; SODismutase; 1; .
SUPFAMSSF54719; SODismutase; 1; .
PROSITEPS00088; SOD_MN; 1; .

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Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the Expasy web server