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Searching in 'World-2DPAGE Repository [0014]' for entry matching: SYDC_RAT

World-2DPAGE Repository (0014):  SYDC_RAT


General information about the entry
View entry in simple text format
Entry nameSYDC_RAT
Primary accession numberP15178
integrated into World-2DPAGE Repository (0014) on October 13, 2008 (release 1)
2D Annotations were last modified onJune 1, 2011 (version 3)
General Annotations were last modified on November 25, 2011 (version 2)
Name and origin of the protein
DescriptionRecName: Full=Aspartyl-tRNA synthetase, cytoplasmic; EC=; AltName: Full=Aspartate--tRNA ligase; Short=AspRS;.
Gene nameName=Dars
Annotated speciesRattus norvegicus (Rat) [TaxID: 10116]
TaxonomyEukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
Maurya D.K., Sundaram C.S., Bhargava P.
''Proteome profile of whole cerebellum of the mature rat''
Proteomics 10(23):4311-4319 (2010)
2D PAGE maps for identified proteins
How to interpret a protein

RAT_CEREBELLUM_21D {Proteome of 21 days old rat cerebellum}
Rattus norvegicus (Rat)
Tissue: Cerebellum
  map experimental info

pI=6.28; Mw=57000  [identification data]

IDENTIFICATION: SPOT 3376: SeqCov=37%. MascotPMF=152 [1].
MAPPING (identification):
SPOT 3376: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1].

Data from Dr. Purnima Bhargava, Centre for Cellular and Molecular Biology, India
UniProtKB/Swiss-ProtP15178; SYDC_RAT.

2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.

External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_11
Entry nameSYDC_RAT
Primary accession numberP15178
Sequence was last modified on April 1, 1990 (version 1)
Annotations were last modified on November 16, 2011 (version 97)
Name and origin of the protein
DescriptionRecName: Full=Aspartyl-tRNA synthetase, cytoplasmic; EC=; AltName: Full=Aspartate--tRNA ligase; Short=AspRS;
Gene nameName=Dars
Encoded onName=Dars; Synonyms=Drs1
KeywordsAcetylation; Aminoacyl-tRNA synthetase; ATP-binding; Complete proteome; Cytoplasm; Ligase; Nucleotide-binding; Phosphoprotein; Protein biosynthesis; Reference proteome.
Copyrighted by the UniProt Consortium, see Distributed under the Creative Commons Attribution-NoDerivs License
EMBLJ04487; AAA40789.1; -; mRNA
EMBLU30812; AAC52981.1; -; Genomic_DNA
EMBLU30485; AAC52981.1; JOINED; Genomic_DNA
EMBLU30800; AAC52981.1; JOINED; Genomic_DNA
EMBLU30801; AAC52981.1; JOINED; Genomic_DNA
EMBLU30802; AAC52981.1; JOINED; Genomic_DNA
EMBLU30803; AAC52981.1; JOINED; Genomic_DNA
EMBLU30804; AAC52981.1; JOINED; Genomic_DNA
EMBLU30805; AAC52981.1; JOINED; Genomic_DNA
EMBLU30806; AAC52981.1; JOINED; Genomic_DNA
EMBLU30807; AAC52981.1; JOINED; Genomic_DNA
EMBLU30808; AAC52981.1; JOINED; Genomic_DNA
EMBLU30809; AAC52981.1; JOINED; Genomic_DNA
EMBLU30810; AAC52981.1; JOINED; Genomic_DNA
EMBLU30811; AAC52981.1; JOINED; Genomic_DNA
EMBLBC072534; AAH72534.1; -; mRNA
IPIIPI00206224; -; .
PIRA32197; SYRTDT; .
RefSeqNP_446251.1; NM_053799.2; .
UniGeneRn.2388; -; .
ProteinModelPortalP15178; -; .
SMRP15178; 22-501; .
IntActP15178; 1; .
STRINGP15178; -; .
PRIDEP15178; -; .
EnsemblENSRNOT00000005127; ENSRNOP00000005127; ENSRNOG00000003743; .
GeneID116483; -; .
KEGGrno:116483; -; .
NMPDRfig|10116.3.peg.9015; -; .
UCSCBC072534; rat; .
CTD1615; -; .
RGD621167; Dars; .
eggNOGroNOG09672; -; .
GeneTreeENSGT00550000074880; -; .
HOVERGENHBG001028; -; .
InParanoidP15178; -; .
OrthoDBEOG470TH2; -; .
PhylomeDBP15178; -; .
NextBio619059; -; .
ArrayExpressP15178; -; .
GenevestigatorP15178; -; .
GermOnlineENSRNOG00000003743; Rattus norvegicus; .
GOGO:0017101; C:aminoacyl-tRNA synthetase multienzyme complex; TAS:RGD; .
GOGO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell; .
GOGO:0004815; F:aspartate-tRNA ligase activity; IEA:EC; .
GOGO:0005524; F:ATP binding; IEA:UniProtKB-KW; .
GOGO:0003676; F:nucleic acid binding; IEA:InterPro; .
GOGO:0006422; P:aspartyl-tRNA aminoacylation; IEA:InterPro; .
InterProIPR004364; aa-tRNA-synt_II; .
InterProIPR018150; aa-tRNA-synt_II-like; .
InterProIPR006195; aa-tRNA-synth_II; .
InterProIPR004523; Asp-tRNA-synth_IIb_arc/euk; .
InterProIPR002312; Asp/Asn-tRNA-synth_IIb; .
InterProIPR012340; NA-bd_OB-fold; .
InterProIPR016027; NA-bd_OB-fold-like; .
InterProIPR004365; NA-bd_OB_tRNA-helicase; .
Gene3DG3DSA:; OB_NA_bd_sub; 1; .
KOK01876; -; .
PANTHERPTHR22594; aa-tRNA-synt_II; 1; .
PANTHERPTHR22594:SF10; PTHR22594:SF10; 1; .
PfamPF00152; tRNA-synt_2; 1; .
PfamPF01336; tRNA_anti; 1; .
SUPFAMSSF50249; Nucleic_acid_OB; 1; .
TIGRFAMsTIGR00458; AspS_arch; 1; .

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Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the Expasy web server