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World-2DPAGE Repository
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Searching in 'World-2DPAGE Repository [0022]' for entry
matching:
TBB2C_RAT
World-2DPAGE Repository
(0022):
TBB2C_RAT
TBB2C_RAT
General information about the entry
View entry in simple text format
Entry name
TBB2C_RAT
Primary accession number
Q6P9T8
integrated into World-2DPAGE Repository (0022) on
May 7, 2010 (release 1)
2D Annotations were last modified on
June 22, 2011 (version 2)
General Annotations were last modified on
November 24, 2011 (version 2)
Name and origin of the protein
Description
RecName: Full=Tubulin beta-2C chain;.
Gene name
Name=Tubb2c
Annotated species
Rattus [TaxID:
10114
]
Taxonomy
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae.
References
[1]
2D-PAGE GEL CHARACTERIZATION
DOI=
10.1002/pmic.201000593
;
Burniston J.G., Kenyani J., Wastling J.M., Burant C.F., Qi N.R., Koch L.G., Britton S.L.
''Proteomic analysis reveals perturbed energy metabolism and elevated oxidative stress in hearts of rats with inborn low aerobic capacity''
Proteomics 11(16):3369-3379 (2011)
2D PAGE maps for identified proteins
How to interpret a protein
HCR_LCR_HEART
{HCR LCR Cardiac Map}
Rattus
Tissue: Heart
map experimental info
HCR_LCR_HEART
MAP LOCATIONS:
SPOT 340
:
pI=4.79; Mw=50225
[identification data]
SPOT 828
:
pI=4.79; Mw=50225
[identification data]
SPOT 932
:
pI=4.79; Mw=50225
[identification data]
IDENTIFICATION:
SPOT 340: SeqCov=31%. Peptides MS=13/20. Mascot PMF Score=109 [
1
]
SPOT 828: SeqCov=15.1%. Peptides MS=15/20. Mascot PMF Score=32 [
1
]; SPOT 932: SeqCov=36.2%. Peptides MS=16/20. Mascot PMF Score=148 [
1
].
PEPTIDE EVIDENCE:
SPOT 340: 310-YLTVAAVFR-318 (55) / 242-FPGQLNADLR-251 (42) / 104-GHYTEGAELVDSVLDVVR-121 (89) [
1
]
SPOT 828: 310-YLTVAAVFR-318 (43) / 242-FPGQLNADLR-251 (35) / 381-ISEQFTAMFR-390 (32) [
1
].
MAPPING (identification):
SPOT
340
:
Peptide mass fingerprinting
[
1
];
Tandem mass spectrometry
[
1
];
SPOT
828
:
Peptide mass fingerprinting
[
1
];
Tandem mass spectrometry
[
1
];
SPOT
932
:
Peptide mass fingerprinting
[
1
].
Copyright
Data from Dr. Jatin Burniston, Liverpool John Moores University, UK
Cross-references
UniProtKB/Swiss-Prot
Q6P9T8; TBB2C_RAT.
2D PAGE maps for identified proteins
How to interpret a protein map
You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
Warning 1
: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
Warning 2
: the 2D PAGE map is built on demand. This may take some few seconds to be computed.
External data extracted from
UniProtKB/Swiss-Prot
Extracted from
UniProtKB/Swiss-Prot
, release:
2011_11
Entry name
TBB2C_RAT
Primary accession number
Q6P9T8
Sequence was last modified on
July 5, 2004 (version 1)
Annotations were last modified on
November 16, 2011 (version 63)
Name and origin of the protein
Description
RecName: Full=Tubulin beta-2C chain;
Gene name
Name=Tubb2c
Encoded on
Name=Tubb2c
Keywords
Acetylation
;
Complete proteome
;
Cytoplasm
;
Cytoskeleton
;
Direct protein sequencing
;
GTP-binding
;
Microtubule
;
Nucleotide-binding
;
Phosphoprotein
;
Reference proteome
.
Copyright
Copyrighted by the UniProt Consortium, see
https://www.uniprot.org/help/license
. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBL
BC060597; AAH60597.1
; -; mRNA
IPI
IPI00400573; -
; .
RefSeq
NP_954525.1; NM_199094.1
; .
UniGene
Rn.110562; -
; .
HSSP
P02554; 1SA1
; .
ProteinModelPortal
Q6P9T8; -
; .
SMR
Q6P9T8; 1-427
; .
IntAct
Q6P9T8; 2
; .
STRING
Q6P9T8; -
; .
PhosphoSite
Q6P9T8; -
; .
PRIDE
Q6P9T8; -
; .
GeneID
296554; -
; .
KEGG
rno:296554; -
; .
UCSC
NM_199094; rat
; .
CTD
10383; -
; .
RGD
735101; Tubb2c
; .
eggNOG
roNOG14625; -
; .
GeneTree
ENSGT00600000084215; -
; .
HOVERGEN
HBG000089; -
; .
InParanoid
Q6P9T8; -
; .
OrthoDB
EOG4DFPNJ; -
; .
PhylomeDB
Q6P9T8; -
; .
Reactome
REACT_115492; Developmental Biology
; .
NextBio
641372; -
; .
ArrayExpress
Q6P9T8; -
; .
Genevestigator
Q6P9T8; -
; .
GO
GO:0005737; C:cytoplasm
; IEA:UniProtKB-KW; .
GO
GO:0005874; C:microtubule
; IEA:UniProtKB-KW; .
GO
GO:0005525; F:GTP binding
; IEA:UniProtKB-KW; .
GO
GO:0003924; F:GTPase activity
; IEA:InterPro; .
GO
GO:0005198; F:structural molecule activity
; IEA:InterPro; .
GO
GO:0007018; P:microtubule-based movement
; IEA:InterPro; .
GO
GO:0051258; P:protein polymerization
; IEA:InterPro; .
InterPro
IPR013838; Beta-tubulin_BS
; .
InterPro
IPR002453; Beta_tubulin
; .
InterPro
IPR008280; Tub_FtsZ_C
; .
InterPro
IPR000217; Tubulin
; .
InterPro
IPR018316; Tubulin/FtsZ_2-layer-sand-dom
; .
InterPro
IPR023123; Tubulin_C
; .
InterPro
IPR017975; Tubulin_CS
; .
InterPro
IPR003008; Tubulin_FtsZ_GTPase
; .
Gene3D
G3DSA:3.30.1330.20; Tubulin/FtsZ_2-layer-sand-dom
; 1; .
Gene3D
G3DSA:1.10.287.600; Tubulin_C
; 1; .
Gene3D
G3DSA:3.40.50.1440; Tubulin_FtsZ
; 1; .
KO
K07375; -
; .
PANTHER
PTHR11588; Tubulin
; 1; .
Pfam
PF00091; Tubulin
; 1; .
Pfam
PF03953; Tubulin_C
; 1; .
PRINTS
PR01163; BETATUBULIN
; .
PRINTS
PR01161; TUBULIN
; .
SMART
SM00864; Tubulin
; 1; .
SMART
SM00865; Tubulin_C
; 1; .
SUPFAM
SSF55307; Tub_FtsZ_C
; 1; .
SUPFAM
SSF52490; Tubulin_FtsZ
; 1; .
PROSITE
PS00227; TUBULIN
; 1; .
PROSITE
PS00228; TUBULIN_B_AUTOREG
; 1; .
World-2DPAGE Repository (search AC)
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