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Searching in 'World-2DPAGE Repository [0030]' for entry matching: TERA_RAT




World-2DPAGE Repository (0030):  TERA_RAT


TERA_RAT


General information about the entry
View entry in simple text format
Entry nameTERA_RAT
Primary accession numberP46462
integrated into World-2DPAGE Repository (0030) on November 9, 2010 (release 1)
2D Annotations were last modified onJune 21, 2011 (version 2)
General Annotations were last modified on November 23, 2011 (version 2)
Name and origin of the protein
DescriptionRecName: Full=Transitional endoplasmic reticulum ATPase; Short=TER ATPase; AltName: Full=15S Mg(2+)-ATPase p97 subunit; AltName: Full=Valosin-containing protein; Short=VCP;.
Gene nameName=Vcp
Annotated speciesRattus norvegicus (Rat) [TaxID: 10116]
TaxonomyEukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
References
[1]   2D-PAGE GEL CHARACTERIZATION
DOI=10.1002/pmic.201000006;
D'Hertog W., Maris M., Thorrez L., Waelkens E., Overbergh L., Mathieu C.
''Two-dimensional gel proteome reference map of INS-1E cells''
Proteomics 11(7):1365-1369 (2011)
2D PAGE maps for identified proteins
How to interpret a protein

RAT_INS1E_4-7 {INS-1E cell line, a model rat cell line for pancreatic beta cells, PH4-7}
Rattus norvegicus (Rat)
RAT_INS1E_4-7
  map experimental info
 
RAT_INS1E_4-7

MAP LOCATIONS:
pI=5.11; Mw=91837  [identification data]
pI=5.18; Mw=91710  [identification data]
pI=5.15; Mw=91078  [identification data]
pI=4.65; Mw=59976  [identification data]

IDENTIFICATION: SPOT 310: Mascot protein score=371. Number of peptides=9 [1]
SPOT 311: Mascot protein score=74. Number of peptides=2 [1]; SPOT 319: Mascot protein score=375. Number of peptides=8 [1]; SPOT 1082: Mascot protein score=756. Number of peptides=9 [1].
MAPPING (identification):
SPOT 310: Tandem mass spectrometry [1];
SPOT 311: Tandem mass spectrometry [1];
SPOT 319: Tandem mass spectrometry [1];
SPOT 1082: Tandem mass spectrometry [1].

Copyright
Data from Dr. Wannes D'Hertog, Catholic University Leuven, Belgium
Cross-references
UniProtKB/Swiss-ProtP46462; TERA_RAT.
World-2DPAGE RepositoryP46462; TERA_RAT.



2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_11
Entry nameTERA_RAT
Primary accession numberP46462
Sequence was last modified on January 23, 2007 (version 3)
Annotations were last modified on November 16, 2011 (version 111)
Name and origin of the protein
DescriptionRecName: Full=Transitional endoplasmic reticulum ATPase; Short=TER ATPase; AltName: Full=15S Mg(2+)-ATPase p97 subunit; AltName: Full=Valosin-containing protein; Short=VCP;
Gene nameName=Vcp
Encoded onName=Vcp
KeywordsAcetylation; ATP-binding; Complete proteome; Cytoplasm; Direct protein sequencing; Hydrolase; Lipid-binding; Nucleotide-binding; Nucleus; Phosphoprotein; Reference proteome; Transport; Ubl conjugation.
Copyright
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBLU11760; AAC52154.1; -; mRNA
EMBLBC060518; AAH60518.1; -; mRNA
IPIIPI00212014; -; .
PIRA55190; A55190; .
RefSeqNP_446316.1; NM_053864.2; .
UniGeneRn.98891; -; .
ProteinModelPortalP46462; -; .
SMRP46462; 18-763; .
IntActP46462; 3; .
MINTMINT-1954391; -; .
STRINGP46462; -; .
PhosphoSiteP46462; -; .
World-2DPAGE0004:P46462; -; .
PRIDEP46462; -; .
EnsemblENSRNOT00000046102; ENSRNOP00000040121; ENSRNOG00000034242; .
GeneID116643; -; .
KEGGrno:116643; -; .
UCSCNM_053864; rat; .
CTD7415; -; .
RGD621595; Vcp; .
eggNOGroNOG06583; -; .
GeneTreeENSGT00600000084477; -; .
HOVERGENHBG001226; -; .
InParanoidP46462; -; .
OrthoDBEOG45TCMK; -; .
PhylomeDBP46462; -; .
NextBio619375; -; .
ArrayExpressP46462; -; .
GenevestigatorP46462; -; .
GermOnlineENSRNOG00000034242; Rattus norvegicus; .
GOGO:0005829; C:cytosol; IDA:RGD; .
GOGO:0005783; C:endoplasmic reticulum; IDA:RGD; .
GOGO:0005792; C:microsome; IDA:RGD; .
GOGO:0005634; C:nucleus; IEA:UniProtKB-SubCell; .
GOGO:0005524; F:ATP binding; IDA:BHF-UCL; .
GOGO:0016887; F:ATPase activity; IDA:RGD; .
GOGO:0042802; F:identical protein binding; IDA:BHF-UCL; .
GOGO:0008289; F:lipid binding; IEA:UniProtKB-KW; .
GOGO:0005102; F:receptor binding; IDA:RGD; .
GOGO:0006888; P:ER to Golgi vesicle-mediated transport; IMP:RGD; .
GOGO:0032436; P:positive regulation of proteasomal ubiquitin-dependent protein catabolic process; IMP:RGD; .
GOGO:0051260; P:protein homooligomerization; IDA:RGD; .
InterProIPR009010; Asp_de-COase-like_fold; .
InterProIPR003593; ATPase_AAA+_core; .
InterProIPR005938; ATPase_AAA_CDC48; .
InterProIPR003959; ATPase_AAA_core; .
InterProIPR003960; ATPase_AAA_CS; .
InterProIPR003338; ATPase_AAA_VAT_N; .
InterProIPR004201; Cell_div_Cdc48_dom2; .
InterProIPR015415; Vps4_C; .
Gene3DG3DSA:2.40.40.20; Asp_decarboxylase-like_fold; 1; .
KOK13525; -; .
PANTHERPTHR23077:SF18; PTHR23077:SF18; 1; .
PfamPF00004; AAA; 2; .
PfamPF02933; CDC48_2; 1; .
PfamPF02359; CDC48_N; 1; .
PfamPF09336; Vps4_C; 1; .
SMARTSM00382; AAA; 2; .
SUPFAMSSF50692; Asp_decarb_fold; 1; .
TIGRFAMsTIGR01243; CDC48; 1; .
PROSITEPS00674; AAA; 2; .



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Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the ExPASy web server