World-2DPAGE Repository
Home
|
Contact
!!This displayer contains script commands. You should enable JavaScripting within your browser preferences, or use another browser!
World-2DPAGE Repository
Search by
[accession number]
[description, ID or gene]
[author names]
[spot ID / serial number]
[identification methods]
[pI / Mw range]
[combined fields]
Maps
[experimental info]
[protein list]
[graphical interface]
Databases
0001
0002
0003
0004
0005
0006
0007
0008
0009
0010
0011
0012
0014
0017
0018
0019
0020
0021
0022
0023
0024
0026
0027
0029
0030
0031
0032
0034
0035
0036
0037
0038
0039
0040
0042
0043
0044
0046
0047
0050
0051
0053
0054
0056
0059
0061
0062
0063
0066
0068
0069
0076
0077
0080
0084
0085
0088
use 'Ctrl' to select several
databases
Select Remote Interfaces
[All Interfaces]
SWISS-2DPAGE
World-2DPAGE Portal
Exclude local DBs
has only effect if a remote
interface is selected
Searching in 'World-2DPAGE Repository [0004]' for entry
matching:
TRFE_RAT
World-2DPAGE Repository
(0004):
TRFE_RAT
TRFE_RAT
General information about the entry
View entry in simple text format
Entry name
TRFE_RAT
Primary accession number
P12346
integrated into World-2DPAGE Repository (0004) on
October 13, 2008 (release 1)
2D Annotations were last modified on
May 18, 2011 (version 2)
General Annotations were last modified on
December 22, 2011 (version 2)
Name and origin of the protein
Description
RecName: Full=Serotransferrin; Short=Transferrin; AltName: Full=Beta-1 metal-binding globulin; AltName: Full=Liver regeneration-related protein LRRG03; AltName: Full=Siderophilin; Flags: Precursor;.
Gene name
Name=Tf
Annotated species
Rattus norvegicus (Rat) [TaxID:
10116
]
Taxonomy
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
References
[1]
MAPPING ON GEL
PubMed=19343716; DOI=
10.1002/pmic.200800664
; [
NCBI
,
EBI
,
Israel
,
Japan
]
Maurya D.K., Sundaram C.S., Bhargava P.
''Proteome profile of the mature rat olfactory bulb''
Proteomics 9(1):2593-2599 (2009)
2D PAGE maps for identified proteins
How to interpret a protein
OB21DSUB
{2-DE gel for Olfactory bulb proteome}
Rattus norvegicus (Rat)
Tissue: Olfactory bulb
map experimental info
OB21DSUB
MAP LOCATIONS:
SPOT 162
:
pI=6.59; Mw=82000
[identification data]
SPOT 170
:
pI=6.78; Mw=82000
[identification data]
MAPPING (identification):
SPOT
162
:
Peptide mass fingerprinting
[
1
];
Tandem mass spectrometry
[
1
];
SPOT
170
:
Peptide mass fingerprinting
[
1
];
Tandem mass spectrometry
[
1
].
Copyright
Data from Dr. Purnima Bhargava, Centre for Cellular and Molecular Biology, India
Cross-references
UniProtKB/Swiss-Prot
P12346; TRFE_RAT.
2D PAGE maps for identified proteins
How to interpret a protein map
You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
Warning 1
: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
Warning 2
: the 2D PAGE map is built on demand. This may take some few seconds to be computed.
External data extracted from
UniProtKB/Swiss-Prot
Extracted from
UniProtKB/Swiss-Prot
, release:
2011_12
Entry name
TRFE_RAT
Primary accession number
P12346
Secondary accession number(s)
Q63602 Q64628 Q64630 Q7TNX0
Sequence was last modified on
January 9, 2007 (version 3)
Annotations were last modified on
November 16, 2011 (version 108)
Name and origin of the protein
Description
RecName: Full=Serotransferrin; Short=Transferrin; AltName: Full=Beta-1 metal-binding globulin; AltName: Full=Liver regeneration-related protein LRRG03; AltName: Full=Siderophilin; Flags: Precursor;
Gene name
Name=Tf
Encoded on
Name=Tf
Keywords
Alternative splicing
;
Complete proteome
;
Direct protein sequencing
;
Disulfide bond
;
Glycoprotein
;
Ion transport
;
Iron
;
Iron transport
;
Metal-binding
;
Methylation
;
Phosphoprotein
;
Reference proteome
;
Repeat
;
Secreted
;
Signal
;
Transport
.
Copyright
Copyrighted by the UniProt Consortium, see
https://www.uniprot.org/help/license
. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBL
X77158; CAA54403.1
; -; mRNA
EMBL
D38380; BAA07458.1
; -; mRNA
EMBL
AY327504; AAP97736.1
; -; mRNA
EMBL
BC087021; AAH87021.1
; -; mRNA
EMBL
M26113; AAA42266.1
; -; mRNA
EMBL
M27966; AAA42267.1
; -; mRNA
IPI
IPI00475946; -
; .
IPI
IPI00679202; -
; .
PIR
S49163; S49163
; .
RefSeq
NP_001013128.1; NM_001013110.1
; .
UniGene
Rn.91296; -
; .
ProteinModelPortal
P12346; -
; .
SMR
P12346; 22-697
; .
STRING
P12346; -
; .
Allergome
1417; Rat n Transferrin
; .
MEROPS
S60.972; -
; .
GlycoSuiteDB
P12346; -
; .
PhosphoSite
P12346; -
; .
World-2DPAGE
0004:P12346; -
; .
PRIDE
P12346; -
; .
Ensembl
ENSRNOT00000012946; ENSRNOP00000012946
; ENSRNOG00000030625; .
Ensembl
ENSRNOT00000045628; ENSRNOP00000045637
; ENSRNOG00000030625; .
GeneID
24825; -
; .
KEGG
rno:24825; -
; .
UCSC
NM_001013110; rat
; .
CTD
7018; -
; .
RGD
3845; Tf
; .
eggNOG
roNOG10662; -
; .
GeneTree
ENSGT00390000001619; -
; .
HOVERGEN
HBG000055; -
; .
NextBio
604536; -
; .
ArrayExpress
P12346; -
; .
Genevestigator
P12346; -
; .
GermOnline
ENSRNOG00000030625; Rattus norvegicus
; .
GO
GO:0005604; C:basement membrane
; IDA:RGD; .
GO
GO:0005615; C:extracellular space
; IDA:RGD; .
GO
GO:0008199; F:ferric iron binding
; IDA:RGD; .
GO
GO:0015091; F:ferric iron transmembrane transporter activity
; IDA:RGD; .
GO
GO:0006953; P:acute-phase response
; IEP:RGD; .
GO
GO:0006879; P:cellular iron ion homeostasis
; TAS:RGD; .
GO
GO:0071320; P:cellular response to cAMP
; IEP:UniProtKB; .
GO
GO:0071372; P:cellular response to follicle-stimulating hormone stimulus
; IEP:UniProtKB; .
GO
GO:0031643; P:positive regulation of myelination
; IDA:RGD; .
GO
GO:0001666; P:response to hypoxia
; IEP:RGD; .
GO
GO:0014070; P:response to organic cyclic compound
; IEP:RGD; .
InterPro
IPR001156; Peptidase_S60
; .
InterPro
IPR016357; Transferrin
; .
InterPro
IPR018195; Transferrin_Fe_BS
; .
KO
K14736; -
; .
PANTHER
PTHR11485; Peptidase_S60
; 1; .
Pfam
PF00405; Transferrin
; 2; .
PIRSF
PIRSF002549; Transferrin
; 1; .
PRINTS
PR00422; TRANSFERRIN
; .
SMART
SM00094; TR_FER
; 2; .
PROSITE
PS00205; TRANSFERRIN_LIKE_1
; 1; .
PROSITE
PS00206; TRANSFERRIN_LIKE_2
; 2; .
PROSITE
PS00207; TRANSFERRIN_LIKE_3
; 2; .
PROSITE
PS51408; TRANSFERRIN_LIKE_4
; 2; .
World-2DPAGE Repository (search AC)
Database constructed and maintained by
SIB
, using the
Make2D-DB II
package (
ver. 3.10.2
) from the
World-2DPAGE Constellation
of the
Expasy web server