World-2DPAGE Home
Home  |  Contact
Due to scheduled maintenance work, this service will not be available from Tuesday August 23rd 06:00 pm until Wednesday August 24th 08:00 am CEST. Apologies for the inconvenience.

World-2DPAGE Repository 
Search by  [accession number] *
[description, ID or gene] 
[author names] 
[spot ID / serial number] 
[identification methods] 
[pI / Mw range] 
[combined fields] 
Maps  [experimental info] 
[protein list] 
[graphical interface]
     Databases

use 'Ctrl' to select several
databases

Select Remote Interfaces
[All Interfaces]
SWISS-2DPAGE
World-2DPAGE Portal
Exclude local DBs
has only effect if a remote
interface is selected
     
Searching in 'World-2DPAGE Repository [0022]' for entry matching: TRI72_RAT




World-2DPAGE Repository (0022):  TRI72_RAT

TRI72_RAT


General information about the entry
View entry in simple text format
Entry nameTRI72_RAT
Primary accession numberA0JPQ4
integrated into World-2DPAGE Repository (0022) on May 7, 2010 (release 1)
2D Annotations were last modified onJune 22, 2011 (version 2)
General Annotations were last modified on November 24, 2011 (version 2)
Name and origin of the protein
DescriptionRecName: Full=Tripartite motif-containing protein 72; AltName: Full=Mitsugumin-53; Short=Mg53;.
Gene nameName=Trim72
Synonyms=Mg53
Annotated speciesRattus [TaxID: 10114]
TaxonomyEukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae.
References
[1]   2D-PAGE GEL CHARACTERIZATION
DOI=10.1002/pmic.201000593;
Burniston J.G., Kenyani J., Wastling J.M., Burant C.F., Qi N.R., Koch L.G., Britton S.L.
''Proteomic analysis reveals perturbed energy metabolism and elevated oxidative stress in hearts of rats with inborn low aerobic capacity''
Proteomics 11(16):3369-3379 (2011)
2D PAGE maps for identified proteins
How to interpret a protein

HCR_LCR_HEART {HCR LCR Cardiac Map}
Rattus
Tissue: Heart
HCR_LCR_HEART
  map experimental info 		 
HCR_LCR_HEART

MAP LOCATIONS:
pI=5.88; Mw=53767  [identification data]
pI=5.88; Mw=53767  [identification data]

IDENTIFICATION: SPOT 38: SeqCov=26.6%. Peptides MS=12/20. Mascot PMF Score=96 [1]
SPOT 452: SeqCov=27%. Peptides MS=11/20. Mascot PMF Score=92 [1].
PEPTIDE EVIDENCE: SPOT 38: 208-ELSSLNSYLEQLR-220 (85) / 150-SVAVLEHQLVEVEETVR-166 (80) / 338-QLLSQGEHYWEVEVGDKPR-356 (96) [1]
SPOT 452: 208-ELSSLNSYLEQLR-220 (67) / 150-SVAVLEHQLVEVEETVR-166 (58) / 338-QLLSQGEHYWEVEVGDKPR-356 (103) [1].
MAPPING (identification):
SPOT 38: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1];
SPOT 452: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1].

Copyright
Data from Dr. Jatin Burniston, Liverpool John Moores University, UK
Cross-references
UniProtKB/Swiss-ProtA0JPQ4; TRI72_RAT.



2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_11
Entry nameTRI72_RAT
Primary accession numberA0JPQ4
Sequence was last modified on December 12, 2006 (version 1)
Annotations were last modified on November 16, 2011 (version 39)
Name and origin of the protein
DescriptionRecName: Full=Tripartite motif-containing protein 72; AltName: Full=Mitsugumin-53; Short=Mg53;
Gene nameName=Trim72
Synonyms=Mg53
Encoded onName=Trim72; Synonyms=Mg53
KeywordsCell membrane; Coiled coil; Complete proteome; Cytoplasmic vesicle; Disulfide bond; Exocytosis; Membrane; Metal-binding; Reference proteome; Transport; Zinc; Zinc-finger.
Copyright
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBLBC127539; AAI27540.1; -; mRNA
IPIIPI00361208; -; .
RefSeqNP_001071143.1; NM_001077675.1; .
UniGeneRn.23565; -; .
ProteinModelPortalA0JPQ4; -; .
PRIDEA0JPQ4; -; .
EnsemblENSRNOT00000029994; ENSRNOP00000030976; ENSRNOG00000022099; .
GeneID365377; -; .
KEGGrno:365377; -; .
CTD493829; -; .
RGD1562778; Trim72; .
eggNOGroNOG08982; -; .
GeneTreeENSGT00570000078805; -; .
HOVERGENHBG098570; -; .
InParanoidA0JPQ4; -; .
OMALRQELSC; -; .
OrthoDBEOG498V10; -; .
NextBio687303; -; .
GenevestigatorA0JPQ4; -; .
GOGO:0030659; C:cytoplasmic vesicle membrane; ISS:UniProtKB; .
GOGO:0042383; C:sarcolemma; ISS:UniProtKB; .
GOGO:0001786; F:phosphatidylserine binding; ISS:UniProtKB; .
GOGO:0008270; F:zinc ion binding; IEA:InterPro; .
GOGO:0006887; P:exocytosis; IEA:UniProtKB-KW; .
GOGO:0007517; P:muscle organ development; ISS:UniProtKB; .
GOGO:0003012; P:muscle system process; ISS:UniProtKB; .
GOGO:0001778; P:plasma membrane repair; ISS:UniProtKB; .
GOGO:0051260; P:protein homooligomerization; ISS:UniProtKB; .
InterProIPR001870; B30.2/SPRY; .
InterProIPR003879; Butyrophylin; .
InterProIPR008985; ConA-like_lec_gl; .
InterProIPR006574; PRY; .
InterProIPR003877; SPRY_rcpt; .
InterProIPR000315; Znf_B-box; .
InterProIPR018957; Znf_C3HC4_RING-type; .
InterProIPR001841; Znf_RING; .
InterProIPR013083; Znf_RING/FYVE/PHD; .
InterProIPR017907; Znf_RING_CS; .
Gene3DG3DSA:3.30.40.10; Znf_RING/FYVE/PHD; 1; .
KOK12036; -; .
PfamPF00622; SPRY; 1; .
PfamPF00643; zf-B_box; 1; .
PfamPF00097; zf-C3HC4; 1; .
PRINTSPR01407; BUTYPHLNCDUF; .
SMARTSM00336; BBOX; 1; .
SMARTSM00589; PRY; 1; .
SMARTSM00184; RING; 1; .
SUPFAMSSF49899; ConA_like_lec_gl; 1; .
PROSITEPS50188; B302_SPRY; 1; .
PROSITEPS50119; ZF_BBOX; 1; .
PROSITEPS00518; ZF_RING_1; 1; .
PROSITEPS50089; ZF_RING_2; 1; .


World-2DPAGE Repository image

World-2DPAGE Repository (search AC)

Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the ExPASy web server