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Searching in 'World-2DPAGE Repository [0030]' for entry matching: VATB2_RAT

World-2DPAGE Repository (0030):  VATB2_RAT


General information about the entry
View entry in simple text format
Entry nameVATB2_RAT
Primary accession numberP62815
integrated into World-2DPAGE Repository (0030) on November 9, 2010 (release 1)
2D Annotations were last modified onJune 21, 2011 (version 2)
General Annotations were last modified on November 23, 2011 (version 2)
Name and origin of the protein
DescriptionRecName: Full=V-type proton ATPase subunit B, brain isoform; Short=V-ATPase subunit B 2; AltName: Full=Endomembrane proton pump 58 kDa subunit; AltName: Full=Vacuolar proton pump subunit B 2;.
Gene nameName=Atp6v1b2
Synonyms=Atp6b2, Vat2
Annotated speciesRattus norvegicus (Rat) [TaxID: 10116]
TaxonomyEukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
D'Hertog W., Maris M., Thorrez L., Waelkens E., Overbergh L., Mathieu C.
''Two-dimensional gel proteome reference map of INS-1E cells''
Proteomics 11(7):1365-1369 (2011)
2D PAGE maps for identified proteins
How to interpret a protein

RAT_INS1E_4-7 {INS-1E cell line, a model rat cell line for pancreatic beta cells, PH4-7}
Rattus norvegicus (Rat)
  map experimental info

pI=5.66; Mw=64093  [identification data]
pI=5.53; Mw=64182  [identification data]

IDENTIFICATION: SPOT 953: Mascot protein score=181. Number of peptides=9 [1]
SPOT 959: Mascot protein score=204. Number of peptides=7 [1].
MAPPING (identification):
SPOT 953: Tandem mass spectrometry [1];
SPOT 959: Tandem mass spectrometry [1].

Data from Dr. Wannes D'Hertog, Catholic University Leuven, Belgium
UniProtKB/Swiss-ProtP62815; VATB2_RAT.
World-2DPAGE RepositoryP62815; VATB2_RAT.

2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.

External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_11
Entry nameVATB2_RAT
Primary accession numberP62815
Secondary accession number(s) O09045 P50517
Sequence was last modified on August 16, 2004 (version 1)
Annotations were last modified on November 16, 2011 (version 70)
Name and origin of the protein
DescriptionRecName: Full=V-type proton ATPase subunit B, brain isoform; Short=V-ATPase subunit B 2; AltName: Full=Endomembrane proton pump 58 kDa subunit; AltName: Full=Vacuolar proton pump subunit B 2;
Gene nameName=Atp6v1b2
Synonyms=Atp6b2, Vat2
Encoded onName=Atp6v1b2; Synonyms=Atp6b2, Vat2
KeywordsComplete proteome; Direct protein sequencing; Hydrogen ion transport; Hydrolase; Ion transport; Membrane; Phosphoprotein; Reference proteome; Transport.
Copyrighted by the UniProt Consortium, see Distributed under the Creative Commons Attribution-NoDerivs License
EMBLY12635; CAA73183.1; -; mRNA
EMBLBC085714; AAH85714.1; -; mRNA
IPIIPI00199305; -; .
RefSeqNP_476561.1; NM_057213.2; .
UniGeneRn.8109; -; .
ProteinModelPortalP62815; -; .
SMRP62815; 53-507; .
IntActP62815; 1; .
STRINGP62815; -; .
PhosphoSiteP62815; -; .
World-2DPAGE0004:P62815; -; .
PRIDEP62815; -; .
EnsemblENSRNOT00000015931; ENSRNOP00000015931; ENSRNOG00000011891; .
GeneID117596; -; .
KEGGrno:117596; -; .
UCSCNM_057213; rat; .
CTD526; -; .
RGD620284; Atp6v1b2; .
eggNOGroNOG17349; -; .
GeneTreeENSGT00550000074724; -; .
HOVERGENHBG002176; -; .
InParanoidP62815; -; .
OrthoDBEOG4HMJ93; -; .
PhylomeDBP62815; -; .
NextBio620435; -; .
ArrayExpressP62815; -; .
GenevestigatorP62815; -; .
GermOnlineENSRNOG00000011891; Rattus norvegicus; .
GOGO:0005829; C:cytosol; ISS:UniProtKB; .
GOGO:0016021; C:integral to membrane; IDA:RGD; .
GOGO:0042470; C:melanosome; IEA:UniProtKB-SubCell; .
GOGO:0005886; C:plasma membrane; ISS:UniProtKB; .
GOGO:0033180; C:proton-transporting V-type ATPase; V1 domain; IEA:InterPro
GOGO:0005773; C:vacuole; TAS:GOC; .
GOGO:0005524; F:ATP binding; IEA:InterPro; .
GOGO:0046933; F:hydrogen ion transporting ATP synthase activity; rotational mechanism; IEA:InterPro
GOGO:0046961; F:proton-transporting ATPase activity; rotational mechanism; IEA:InterPro
GOGO:0015991; P:ATP hydrolysis coupled proton transport; IEA:InterPro; .
GOGO:0007035; P:vacuolar acidification; TAS:RGD; .
InterProIPR020003; ATPase_a/bsu_AS; .
InterProIPR000793; ATPase_F1/V1/A1-cplx_a/bsu_C; .
InterProIPR004100; ATPase_F1/V1/A1-cplx_a/bsu_N; .
InterProIPR000194; ATPase_F1/V1/A1_a/bsu_nucl-bd; .
InterProIPR005723; ATPase_V1-cplx_bsu; .
InterProIPR022879; V-ATPase_su_B/beta; .
KOK02147; -; .
PfamPF00006; ATP-synt_ab; 1; .
PfamPF00306; ATP-synt_ab_C; 1; .
PfamPF02874; ATP-synt_ab_N; 1; .
TIGRFAMsTIGR01040; V-ATPase_V1_B; 1; .

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Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the Expasy web server