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World-2DPAGE Repository

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Searching in 'World-2DPAGE Repository [0004]' for entry matching: VDAC1_RAT

World-2DPAGE Repository (0004):  VDAC1_RAT


General information about the entry
View entry in simple text format
Entry nameVDAC1_RAT
Primary accession numberQ9Z2L0
integrated into World-2DPAGE Repository (0004) on October 13, 2008 (release 1)
2D Annotations were last modified onMay 18, 2011 (version 2)
General Annotations were last modified on December 22, 2011 (version 2)
Name and origin of the protein
DescriptionRecName: Full=Voltage-dependent anion-selective channel protein 1; Short=VDAC-1; Short=rVDAC1; AltName: Full=Outer mitochondrial membrane protein porin 1;.
Gene nameName=Vdac1
Annotated speciesRattus norvegicus (Rat) [TaxID: 10116]
TaxonomyEukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
PubMed=19343716; DOI=10.1002/pmic.200800664; [NCBI, EBI, Israel, Japan]
Maurya D.K., Sundaram C.S., Bhargava P.
''Proteome profile of the mature rat olfactory bulb''
Proteomics 9(1):2593-2599 (2009)
2D PAGE maps for identified proteins
How to interpret a protein

OB21DSUB {2-DE gel for Olfactory bulb proteome}
Rattus norvegicus (Rat)
Tissue: Olfactory bulb
  map experimental info

pI=8.14; Mw=32000  [identification data]
pI=8.50; Mw=32000  [identification data]

MAPPING (identification):
SPOT 549: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1];
SPOT 553: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1].

Data from Dr. Purnima Bhargava, Centre for Cellular and Molecular Biology, India
UniProtKB/Swiss-ProtQ9Z2L0; VDAC1_RAT.

2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.

External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_12
Entry nameVDAC1_RAT
Primary accession numberQ9Z2L0
Secondary accession number(s) A1L125 Q3MHT8 Q5M944 Q5M972 Q6IN28 Q6P9W9
Sequence was last modified on January 23, 2007 (version 4)
Annotations were last modified on November 16, 2011 (version 84)
Name and origin of the protein
DescriptionRecName: Full=Voltage-dependent anion-selective channel protein 1; Short=VDAC-1; Short=rVDAC1; AltName: Full=Outer mitochondrial membrane protein porin 1;
Gene nameName=Vdac1
Encoded onName=Vdac1
KeywordsAcetylation; Apoptosis; Cell membrane; Complete proteome; Direct protein sequencing; Ion transport; Membrane; Mitochondrion; Mitochondrion outer membrane; NAD; Nucleotide-binding; Phosphoprotein; Porin; Reference proteome; Transmembrane; Transmembrane beta strand; Transport.
Copyrighted by the UniProt Consortium, see Distributed under the Creative Commons Attribution-NoDerivs License
EMBLAF048828; AAD02476.1; -; mRNA
EMBLAB039662; BAB13473.1; -; mRNA
EMBLAF268467; AAF80115.1; -; mRNA
EMBLBC060558; AAH60558.1; ALT_INIT; mRNA
EMBLBC072484; AAH72484.2; -; mRNA
EMBLBC087573; AAH87573.2; -; mRNA
EMBLBC087657; AAH87657.2; -; mRNA
EMBLBC104684; AAI04685.2; -; mRNA
EMBLBC127491; AAI27492.1; -; mRNA
IPIIPI00421874; -; .
RefSeqNP_112643.1; NM_031353.1; .
UniGeneRn.54594; -; .
IntActQ9Z2L0; 1; .
MINTMINT-1541752; -; .
STRINGQ9Z2L0; -; .
PhosphoSiteQ9Z2L0; -; .
World-2DPAGE0004:Q9Z2L0; -; .
PRIDEQ9Z2L0; -; .
EnsemblENSRNOT00000008477; ENSRNOP00000008477; ENSRNOG00000006375; .
GeneID83529; -; .
KEGGrno:83529; -; .
UCSCNM_031353; rat; .
CTD7416; -; .
RGD621575; Vdac1; .
eggNOGroNOG10550; -; .
GeneTreeENSGT00390000011336; -; .
HOVERGENHBG054036; -; .
InParanoidQ9Z2L0; -; .
OrthoDBEOG4T4CVZ; -; .
PhylomeDBQ9Z2L0; -; .
NextBio616021; -; .
ArrayExpressQ9Z2L0; -; .
GenevestigatorQ9Z2L0; -; .
GermOnlineENSRNOG00000006375; Rattus norvegicus; .
GOGO:0005741; C:mitochondrial outer membrane; IDA:RGD; .
GOGO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell; .
GOGO:0046930; C:pore complex; IEA:UniProtKB-KW; .
GOGO:0000166; F:nucleotide binding; IEA:UniProtKB-KW; .
GOGO:0015288; F:porin activity; IEA:UniProtKB-KW; .
GOGO:0032403; F:protein complex binding; IDA:RGD; .
GOGO:0008308; F:voltage-gated anion channel activity; ISS:UniProtKB; .
GOGO:0006915; P:apoptotic process; IEA:UniProtKB-KW; .
GOGO:0006851; P:mitochondrial calcium ion transport; IDA:RGD; .
InterProIPR001925; Porin_Euk; .
KOK05862; -; .
PfamPF01459; Porin_3; 1; .

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Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the Expasy web server