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World-2DPAGE Repository

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Searching in 'World-2DPAGE Repository [0027]' for entry matching: VIME_MOUSE

World-2DPAGE Repository (0027):  VIME_MOUSE


General information about the entry
View entry in simple text format
Entry nameVIME_MOUSE
Primary accession numberP20152
integrated into World-2DPAGE Repository (0027) on September 30, 2010 (release 1)
2D Annotations were last modified onJune 21, 2011 (version 2)
General Annotations were last modified on November 23, 2011 (version 2)
Name and origin of the protein
DescriptionRecName: Full=Vimentin;.
Gene nameName=Vim
Annotated speciesMus musculus (Mouse) [TaxID: 10090]
TaxonomyEukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus.
Blutke A., Block C., Berendt F., Herbach N., Kemter E., Amann K., Frolich T., Arnold G.J., Wanke R.
''Differential glomerular proteome analysis of two murine nephropathy models at onset of albuminuria''
Proteomics - Clinical Applications 5(6):375-381 (2011)
2D PAGE maps for identified proteins
How to interpret a protein

GIPRDN_4-7 {glomerular protein lysates of a GIPRdn-tg animal}
Mus musculus (Mouse)
  map experimental info

pI=4.71; Mw=45000  [identification data]

SPOT 14: Avg ratio GIPRdn-tg vs. control=1.67 (p-value=0.0094) [1].

IDENTIFICATION: SPOT 14: SeqCov=73%. Mascot protein score=789 [1].
MAPPING (identification):
SPOT 14: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1].

Data from Dr. Andreas Blutke, Institute of Veterinary Pathology, University Munich, Germany
UniProtKB/Swiss-ProtP20152; VIME_MOUSE.
World-2DPAGE RepositoryP20152; VIME_MOUSE.

2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.

External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_11
Entry nameVIME_MOUSE
Primary accession numberP20152
Secondary accession number(s) O08704 Q8CCH1
Sequence was last modified on January 23, 2007 (version 3)
Annotations were last modified on November 16, 2011 (version 128)
Name and origin of the protein
DescriptionRecName: Full=Vimentin;
Gene nameName=Vim
Encoded onName=Vim
KeywordsAcetylation; Coiled coil; Complete proteome; Cytoplasm; Direct protein sequencing; Intermediate filament; Phosphoprotein; Reference proteome.
Copyrighted by the UniProt Consortium, see Distributed under the Creative Commons Attribution-NoDerivs License
EMBLM24849; AAA40555.1; -; mRNA
EMBLX56397; CAA39807.1; -; mRNA
EMBLM26251; AAA40556.1; -; mRNA
EMBLZ22526; CAA80251.1; -; Genomic_DNA
EMBLX51438; CAA35803.1; -; mRNA
EMBLY07738; CAA69019.1; -; Genomic_DNA
EMBLAK033175; BAC28181.1; -; mRNA
EMBLD50805; BAA19834.1; -; Genomic_DNA
IPIIPI00227299; -; .
PIRA43803; A43803; .
RefSeqNP_035831.2; NM_011701.4; .
UniGeneMm.268000; -; .
ProteinModelPortalP20152; -; .
SMRP20152; 101-138; 141-248; 264-406
DIPDIP-188N; -; .
IntActP20152; 10; .
MINTMINT-1202726; -; .
STRINGP20152; -; .
PhosphoSiteP20152; -; .
SWISS-2DPAGEP20152; -; .
UCD-2DPAGEP20152; -; .
PRIDEP20152; -; .
EnsemblENSMUST00000028062; ENSMUSP00000028062; ENSMUSG00000026728; .
GeneID22352; -; .
KEGGmmu:22352; -; .
CTD7431; -; .
MGIMGI:98932; Vim; .
HOGENOMHBG715391; -; .
HOVERGENHBG013015; -; .
InParanoidP20152; -; .
OrthoDBEOG4GHZPD; -; .
PhylomeDBP20152; -; .
NextBio302643; -; .
ArrayExpressP20152; -; .
BgeeP20152; -; .
CleanExMM_VIM; -; .
GenevestigatorP20152; -; .
GermOnlineENSMUSG00000026728; Mus musculus; .
GOGO:0031252; C:cell leading edge; IDA:MGI; .
GOGO:0045098; C:type III intermediate filament; TAS:MGI; .
GOGO:0005212; F:structural constituent of eye lens; IDA:MGI; .
GOGO:0014002; P:astrocyte development; IGI:MGI; .
GOGO:0060020; P:Bergmann glial cell differentiation; IMP:MGI; .
GOGO:0045109; P:intermediate filament organization; IGI:MGI; .
GOGO:0070307; P:lens fiber cell development; IDA:MGI; .
GOGO:0010977; P:negative regulation of neuron projection development; IGI:MGI; .
InterProIPR016044; F; .
InterProIPR001664; IF; .
InterProIPR006821; Intermed_filament_DNA-bd; .
InterProIPR018039; Intermediate_filament_CS; .
KOK07606; -; .
PANTHERPTHR23239; IF; 1; .
PfamPF00038; Filament; 1; .
PfamPF04732; Filament_head; 1; .
PROSITEPS00226; IF; 1; .

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World-2DPAGE Repository (search AC)

Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the Expasy web server