World-2DPAGE Repository
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World-2DPAGE Repository
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Select Remote Interfaces
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SWISS-2DPAGE
World-2DPAGE Portal
Exclude local DBs
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Searching in 'World-2DPAGE Repository [0019]' for entry
matching:
WDR1_RAT
World-2DPAGE Repository
(0019):
WDR1_RAT
WDR1_RAT
General information about the entry
View entry in simple text format
Entry name
WDR1_RAT
Primary accession number
Q5RKI0
integrated into World-2DPAGE Repository (0019) on
December 9, 2009 (release 1)
2D Annotations were last modified on
May 30, 2011 (version 2)
General Annotations were last modified on
January 13, 2012 (version 2)
Name and origin of the protein
Description
RecName: Full=WD repeat-containing protein 1;.
Gene name
Name=Wdr1
Annotated species
Rattus norvegicus (Rat) [TaxID:
10116
]
Taxonomy
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
References
[1]
2D-PAGE GEL CHARACTERIZATION
DOI=
10.1111/j.1471-4159.2010.06719.x
;
VanGuilder H.D., Yan H., Farley J.A., Sonntag W.E., Freeman W.M.
''Aging alters the expression of neurotransmission-regulating proteins in the hippocampal synaptoproteome''
J of Neurochemistry 113(6):1577-1588 (2010)
2D PAGE maps for identified proteins
How to interpret a protein
HIPP_SYNAP
{Rat hippocampal synaptoproteome}
Rattus norvegicus (Rat)
Tissue: Hippocampus
map experimental info
HIPP_SYNAP
MAP LOCATIONS:
SPOT 325
:
pI=6.15; Mw=66824
[identification data]
IDENTIFICATION:
SPOT 325: Peptides number=4. SeqCov=5.6%. MOWSE score=3.04E+3 [
1
].
MAPPING (identification):
SPOT
325
:
Peptide mass fingerprinting
[
1
];
Tandem mass spectrometry
[
1
].
Copyright
Data from Dr. Willard Freeman, Penn State College of Medicine, USA
Cross-references
UniProtKB/Swiss-Prot
Q5RKI0; WDR1_RAT.
2D PAGE maps for identified proteins
How to interpret a protein map
You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
Warning 1
: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
Warning 2
: the 2D PAGE map is built on demand. This may take some few seconds to be computed.
External data extracted from
UniProtKB/Swiss-Prot
Extracted from
UniProtKB/Swiss-Prot
, release:
2011_12
Entry name
WDR1_RAT
Primary accession number
Q5RKI0
Sequence was last modified on
January 23, 2007 (version 3)
Annotations were last modified on
November 16, 2011 (version 63)
Name and origin of the protein
Description
RecName: Full=WD repeat-containing protein 1;
Gene name
Name=Wdr1
Encoded on
Name=Wdr1
Keywords
Acetylation
;
Actin-binding
;
Complete proteome
;
Cytoplasm
;
Cytoskeleton
;
Direct protein sequencing
;
Phosphoprotein
;
Reference proteome
;
Repeat
;
WD repeat
.
Copyright
Copyrighted by the UniProt Consortium, see
https://www.uniprot.org/help/license
. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBL
AY986483; AAX94056.1
; -; mRNA
EMBL
BC085864; AAH85864.1
; -; mRNA
IPI
IPI00215349; -
; .
RefSeq
NP_001014157.1; NM_001014135.1
; .
UniGene
Rn.3168; -
; .
HSSP
Q11176; 1NR0
; .
ProteinModelPortal
Q5RKI0; -
; .
STRING
Q5RKI0; -
; .
PhosphoSite
Q5RKI0; -
; .
World-2DPAGE
0004:Q5RKI0; -
; .
PRIDE
Q5RKI0; -
; .
Ensembl
ENSRNOT00000024012; ENSRNOP00000024012
; ENSRNOG00000028498; .
GeneID
360950; -
; .
KEGG
rno:360950; -
; .
UCSC
NM_001014135; rat
; .
CTD
9948; -
; .
RGD
1305789; Wdr1
; .
eggNOG
roNOG12863; -
; .
GeneTree
ENSGT00390000009416; -
; .
HOVERGEN
HBG000780; -
; .
InParanoid
Q5RKI0; -
; .
OrthoDB
EOG4WH8KB; -
; .
PhylomeDB
Q5RKI0; -
; .
NextBio
674693; -
; .
ArrayExpress
Q5RKI0; -
; .
Genevestigator
Q5RKI0; -
; .
GO
GO:0005737; C:cytoplasm
; IEA:UniProtKB-KW; .
GO
GO:0005856; C:cytoskeleton
; IEA:UniProtKB-SubCell; .
GO
GO:0003779; F:actin binding
; IEA:UniProtKB-KW; .
InterPro
IPR020472; G-protein_beta_WD-40_rep
; .
InterPro
IPR015943; WD40/YVTN_repeat-like_dom
; .
InterPro
IPR001680; WD40_repeat
; .
InterPro
IPR011046; WD40_repeat-like_dom
; .
InterPro
IPR019782; WD40_repeat_2
; .
InterPro
IPR019775; WD40_repeat_CS
; .
InterPro
IPR017986; WD40_repeat_dom
; .
InterPro
IPR019781; WD40_repeat_subgr
; .
Gene3D
G3DSA:2.130.10.10; WD40/YVTN_repeat-like
; 3; .
Pfam
PF00400; WD40
; 10; .
PRINTS
PR00320; GPROTEINBRPT
; .
SMART
SM00320; WD40
; 11; .
SUPFAM
SSF50978; WD40_like
; 2; .
PROSITE
PS00678; WD_REPEATS_1
; 1; .
PROSITE
PS50082; WD_REPEATS_2
; 5; .
PROSITE
PS50294; WD_REPEATS_REGION
; 1; .
World-2DPAGE Repository (search AC)
Database constructed and maintained by
SIB
, using the
Make2D-DB II
package (
ver. 3.10.2
) from the
World-2DPAGE Constellation
of the
Expasy web server