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Searching in 'World-2DPAGE Repository [0003]' for entry matching: P10796




World-2DPAGE Repository (0003):  P10796


P10796


General information about the entry
View entry in simple text format
Entry nameRBS1B_ARATH
Primary accession numberP10796
integrated into World-2DPAGE Repository (0003) on October 14, 2008 (release 1)
2D Annotations were last modified onMay 18, 2011 (version 2)
General Annotations were last modified on November 15, 2011 (version 2)
Name and origin of the protein
DescriptionRecName: Full=Ribulose bisphosphate carboxylase small chain 1B, chloroplastic; Short=RuBisCO small subunit 1B; EC=4.1.1.39; Flags: Precursor;.
Gene nameName=RBCS-1B
Synonyms=ATS1B
OrderedLocusNames=At5g38430
ORFNames=MXI10.15
Annotated speciesArabidopsis thaliana (Mouse-ear cress) [TaxID: 3702]
TaxonomyEukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core; eudicotyledons; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
References
[1]   MAPPING ON GEL
PubMed=18656559; DOI=10.1016/j.jprot.2008.06.012; [NCBI, EBI, Israel, Japan]
Maldonado A.M., Echevarria-Zomeno S., Jean-Baptiste S., Hernandez M., Jorrin-Novo J.V.
''Evaluation of three different protocols of protein extraction for Arabidopsis thaliana leaf proteome analysis by two-dimensional electrophoresis''
J. Proteomics 71(4):461-472 (2008)
2D PAGE maps for identified proteins
How to interpret a protein

PHENOL_2 {Phenol 2}
Arabidopsis thaliana (Mouse-ear cress)
Tissue: Leaf
PHENOL_2
  map experimental info
 
PHENOL_2

MAP LOCATIONS:
pI=6.72; Mw=15130  [identification data]

IDENTIFICATION: SPOT 69: SeqCov=56%. Mascot (Protein score/CI%=234/100, Total ion score/CI%=126/100) [1].
MAPPING (identification):
SPOT 69: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1].



TCA-ACETONE_3 {TCA-Acetone 3}
Arabidopsis thaliana (Mouse-ear cress)
Tissue: Leaf
TCA-ACETONE_3
  map experimental info
 
TCA-ACETONE_3

MAP LOCATIONS:
pI=6.72; Mw=15130  [identification data]

IDENTIFICATION: SPOT 69: SeqCov=56%. Mascot (Protein score/CI%=234/100, Total ion score/CI%=126/100) [1].
MAPPING (identification):
SPOT 69: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1].



TCA-ACETONE-PHENOL_3 {TCA-Acetone-Phenol 3}
Arabidopsis thaliana (Mouse-ear cress)
Tissue: Leaf
TCA-ACETONE-PHENOL_3
  map experimental info
 
TCA-ACETONE-PHENOL_3

MAP LOCATIONS:
pI=6.72; Mw=15130  [identification data]

IDENTIFICATION: SPOT 69: SeqCov=56%. Mascot (Protein score/CI%=234/100, Total ion score/CI%=126/100) [1].
MAPPING (identification):
SPOT 69: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1].

Copyright
Data from Dr. Jesus V. Jorrin-Novo, University of Cordoba, Spain
Cross-references
UniProtKB/Swiss-ProtP10796; RBS1B_ARATH.
World-2DPAGE RepositoryP10796; RBS1B_ARATH.



2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_10
Entry nameRBS1B_ARATH
Primary accession numberP10796
Sequence was last modified on July 1, 1989 (version 1)
Annotations were last modified on October 19, 2011 (version 109)
Name and origin of the protein
DescriptionRecName: Full=Ribulose bisphosphate carboxylase small chain 1B, chloroplastic; Short=RuBisCO small subunit 1B; EC=4.1.1.39; Flags: Precursor;
Gene nameName=RBCS-1B
Synonyms=ATS1B
OrderedLocusNames=At5g38430
ORFNames=MXI10.15
Encoded onName=RBCS-1B; Synonyms=ATS1B; OrderedLocusNames=At5g38430; ORFNames=MXI10.15
KeywordsCalvin cycle; Carbon dioxide fixation; Chloroplast; Complete proteome; Lyase; Membrane; Monooxygenase; Oxidoreductase; Photorespiration; Photosynthesis; Plastid; Reference proteome; Transit peptide.
Copyright
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBLX14564; CAA32700.1; -; Genomic_DNA
EMBLAB005248; BAB09355.1; -; Genomic_DNA
EMBLCP002688; AED94315.1; -; Genomic_DNA
EMBLAF410283; AAK95269.1; -; mRNA
EMBLAY143814; AAN28753.1; -; mRNA
IPIIPI00521186; -; .
PIRS03717; RKMUB1; .
RefSeqNP_198659.1; NM_123204.3; .
UniGeneAt.25361; -; .
UniGeneAt.25577; -; .
UniGeneAt.46639; -; .
UniGeneAt.49098; -; .
UniGeneAt.70032; -; .
UniGeneAt.70053; -; .
UniGeneAt.73308; -; .
UniGeneAt.75082; -; .
ProteinModelPortalP10796; -; .
SMRP10796; 56-178; .
IntActP10796; 1; .
STRINGP10796; -; .
World-2DPAGE0003:P10796; -; .
PRIDEP10796; -; .
EnsemblPlantsAT5G38430.1; AT5G38430.1; AT5G38430; .
GeneID833830; -; .
GenomeReviewsBA000015_GR; AT5G38430; .
KEGGath:AT5G38430; -; .
NMPDRfig|3702.1.peg.25535; -; .
TAIRAt5g38430; -; .
eggNOGCOG4451; -; .
GeneTreeEPGT00050000018478; -; .
HOGENOMHBG608223; -; .
InParanoidP10796; -; .
OMAYRENSTS; -; .
ProtClustDBPLN02289; -; .
GenevestigatorP10796; -; .
GermOnlineAT5G38430; Arabidopsis thaliana; .
GOGO:0048046; C:apoplast; IDA:TAIR; .
GOGO:0031969; C:chloroplast membrane; IEA:UniProtKB-SubCell; .
GOGO:0009570; C:chloroplast stroma; IDA:TAIR; .
GOGO:0009579; C:thylakoid; IDA:TAIR; .
GOGO:0004497; F:monooxygenase activity; IEA:UniProtKB-KW; .
GOGO:0016984; F:ribulose-bisphosphate carboxylase activity; IEA:EC; .
GOGO:0009853; P:photorespiration; IEA:UniProtKB-KW; .
GOGO:0019253; P:reductive pentose-phosphate cycle; IEA:UniProtKB-KW; .
GOGO:0009637; P:response to blue light; IEP:TAIR; .
GOGO:0010218; P:response to far red light; IEP:TAIR; .
GOGO:0010114; P:response to red light; IEP:TAIR; .
InterProIPR024681; RuBisCO_sc; .
InterProIPR000894; RuBisCO_sc_dom; .
InterProIPR024680; RuBisCO_ssu_N; .
Gene3DG3DSA:3.30.190.10; RuBisCO_small; 1; .
PfamPF12338; RbcS; 1; .
PfamPF00101; RuBisCO_small; 1; .
PRINTSPR00152; RUBISCOSMALL; .
SMARTSM00961; RuBisCO_small; 1; .
SUPFAMSSF55239; RuBisCO_small; 1; .



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Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the ExPASy web server