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Searching in 'World-2DPAGE Repository [0003]' for entry matching: Q39258




World-2DPAGE Repository (0003):  Q39258


Q39258


General information about the entry
View entry in simple text format
Entry nameVATE1_ARATH
Primary accession numberQ39258
integrated into World-2DPAGE Repository (0003) on October 14, 2008 (release 1)
2D Annotations were last modified onMay 18, 2011 (version 2)
General Annotations were last modified on November 15, 2011 (version 2)
Name and origin of the protein
DescriptionRecName: Full=V-type proton ATPase subunit E1; Short=V-ATPase subunit E1; AltName: Full=Protein EMBRYO DEFECTIVE 2448; AltName: Full=Vacuolar H(+)-ATPase subunit E isoform 1; AltName: Full=Vacuolar proton pump subunit E1;.
Gene nameName=VHA-E1
Synonyms=EMB2448, TUF, TUFF, VATE
OrderedLocusNames=At4g11150
ORFNames=F2P3.10, T22B4.130
Annotated speciesArabidopsis thaliana (Mouse-ear cress) [TaxID: 3702]
TaxonomyEukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core; eudicotyledons; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
References
[1]   MAPPING ON GEL
PubMed=18656559; DOI=10.1016/j.jprot.2008.06.012; [NCBI, EBI, Israel, Japan]
Maldonado A.M., Echevarria-Zomeno S., Jean-Baptiste S., Hernandez M., Jorrin-Novo J.V.
''Evaluation of three different protocols of protein extraction for Arabidopsis thaliana leaf proteome analysis by two-dimensional electrophoresis''
J. Proteomics 71(4):461-472 (2008)
2D PAGE maps for identified proteins
How to interpret a protein

PHENOL_2 {Phenol 2}
Arabidopsis thaliana (Mouse-ear cress)
Tissue: Leaf
PHENOL_2
  map experimental info
 
PHENOL_2

MAP LOCATIONS:
pI=6.67; Mw=33110  [identification data]

IDENTIFICATION: SPOT 66: SeqCov=51%. Mascot (Protein score/CI%=193/100, Total ion score/CI%=30/98.28) [1].
MAPPING (identification):
SPOT 66: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1].



TCA-ACETONE_3 {TCA-Acetone 3}
Arabidopsis thaliana (Mouse-ear cress)
Tissue: Leaf
TCA-ACETONE_3
  map experimental info
 
TCA-ACETONE_3

MAP LOCATIONS:
pI=6.67; Mw=33110  [identification data]

IDENTIFICATION: SPOT 66: SeqCov=51%. Mascot (Protein score/CI%=193/100, Total ion score/CI%=30/98.28) [1].
MAPPING (identification):
SPOT 66: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1].



TCA-ACETONE-PHENOL_3 {TCA-Acetone-Phenol 3}
Arabidopsis thaliana (Mouse-ear cress)
Tissue: Leaf
TCA-ACETONE-PHENOL_3
  map experimental info
 
TCA-ACETONE-PHENOL_3

MAP LOCATIONS:
pI=6.67; Mw=33110  [identification data]

IDENTIFICATION: SPOT 66: SeqCov=51%. Mascot (Protein score/CI%=193/100, Total ion score/CI%=30/98.28) [1].
MAPPING (identification):
SPOT 66: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1].

Copyright
Data from Dr. Jesus V. Jorrin-Novo, University of Cordoba, Spain
Cross-references
UniProtKB/Swiss-ProtQ39258; VATE1_ARATH.
World-2DPAGE RepositoryQ39258; VATE1_ARATH.



2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_10
Entry nameVATE1_ARATH
Primary accession numberQ39258
Secondary accession number(s) O82502
Sequence was last modified on January 24, 2001 (version 2)
Annotations were last modified on September 21, 2011 (version 94)
Name and origin of the protein
DescriptionRecName: Full=V-type proton ATPase subunit E1; Short=V-ATPase subunit E1; AltName: Full=Protein EMBRYO DEFECTIVE 2448; AltName: Full=Vacuolar H(+)-ATPase subunit E isoform 1; AltName: Full=Vacuolar proton pump subunit E1;
Gene nameName=VHA-E1
Synonyms=EMB2448, TUF, TUFF, VATE
OrderedLocusNames=At4g11150
ORFNames=F2P3.10, T22B4.130
Encoded onName=VHA-E1; Synonyms=EMB2448, TUF, TUFF, VATE; OrderedLocusNames=At4g11150; ORFNames=F2P3.10, T22B4.130
KeywordsCoiled coil; Complete proteome; Hydrogen ion transport; Ion transport; Membrane; Reference proteome; Transport; Vacuole.
Copyright
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBLX92117; CAA63086.1; -; mRNA
EMBLAF080120; AAC35545.1; -; Genomic_DNA
EMBLAL049876; CAB43050.1; -; Genomic_DNA
EMBLAL161531; CAB81216.1; -; Genomic_DNA
EMBLCP002687; AEE82978.1; -; Genomic_DNA
EMBLAY065119; AAL38295.1; -; mRNA
EMBLAY081632; AAM10194.1; -; mRNA
IPIIPI00541951; -; .
PIRT01918; T01918; .
RefSeqNP_192853.1; NM_117185.4; .
UniGeneAt.23873; -; .
ProteinModelPortalQ39258; -; .
SMRQ39258; 87-226; .
IntActQ39258; 1; .
STRINGQ39258; -; .
TCDB3.A.2.2.5; H+- or Na+-translocating F-type; V-type and A-type ATPase (F-ATPase) superfamily; .
World-2DPAGE0003:Q39258; -; .
PRIDEQ39258; -; .
EnsemblPlantsAT4G11150.1; AT4G11150.1; AT4G11150; .
GeneID826716; -; .
GenomeReviewsCT486007_GR; AT4G11150; .
KEGGath:AT4G11150; -; .
NMPDRfig|3702.1.peg.18781; -; .
TAIRAt4g11150; -; .
eggNOGKOG1664; -; .
GeneTreeEPGT00070000028960; -; .
HOGENOMHBG525538; -; .
InParanoidQ39258; -; .
OMAQQRQKIM; -; .
PhylomeDBQ39258; -; .
ProtClustDBCLSN2682633; -; .
ArrayExpressQ39258; -; .
GenevestigatorQ39258; -; .
GermOnlineAT4G11150; Arabidopsis thaliana; .
GOGO:0022626; C:cytosolic ribosome; IDA:TAIR; .
GOGO:0009705; C:plant-type vacuole membrane; IDA:TAIR; .
GOGO:0033178; C:proton-transporting two-sector ATPase complex; catalytic domain; IEA:InterPro
GOGO:0046961; F:proton-transporting ATPase activity; rotational mechanism; TAS:TAIR
GOGO:0015991; P:ATP hydrolysis coupled proton transport; IEA:InterPro; .
GOGO:0042742; P:defense response to bacterium; IEP:TAIR; .
GOGO:0009793; P:embryo development ending in seed dormancy; IMP:TAIR; .
GOGO:0007030; P:Golgi organization; IMP:TAIR; .
GOGO:0009832; P:plant-type cell wall biogenesis; IMP:TAIR; .
GOGO:0009409; P:response to cold; IEP:TAIR; .
GOGO:0009651; P:response to salt stress; IEP:TAIR; .
InterProIPR002842; ATPase_V1/A1-cplx_esu; .
PfamPF01991; vATP-synt_E; 1; .



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Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the ExPASy web server