Attention: World-2DPAGE is no longer maintained.

World-2DPAGE Repository  Search by  [accession number]  [description, ID or gene]  [author names]  [spot ID / serial number]  [identification methods]  [pI / Mw range]  [combined fields]  Maps  [experimental info]  [protein list]  [graphical interface]      Databases 0001 0002 0003 0004 0005 0006 0007 0008 0009 0010 0011 0012 0014 0017 0018 0019 0020 0021 0022 0023 0024 0026 0027 0029 0030 0031 0032 0034 0035 0036 0037 0038 0039 0040 0042 0043 0044 0046 0047 0050 0051 0053 0054 0056 0059 0061 0062 0063 0066 0068 0069 0076 0077 0080 0084 0085 0088 use 'Ctrl' to select several databases Select Remote Interfaces [All Interfaces] SWISS-2DPAGE World-2DPAGE Portal Exclude local DBs has only effect if a remote interface is selected

Searching in 'World-2DPAGE Repository [0003]' for entry matching: Q39258 World-2DPAGE Repository (0003):  Q39258 Q39258 General information about the entry View entry in simple text format Entry name VATE1_ARATH Primary accession number Q39258 integrated into World-2DPAGE Repository (0003) on  October 14, 2008 (release 1) 2D Annotations were last modified on May 18, 2011 (version 2) General Annotations were last modified on  November 15, 2011 (version 2) Name and origin of the protein Description RecName: Full=V-type proton ATPase subunit E1; Short=V-ATPase subunit E1; AltName: Full=Protein EMBRYO DEFECTIVE 2448; AltName: Full=Vacuolar H(+)-ATPase subunit E isoform 1; AltName: Full=Vacuolar proton pump subunit E1;. Gene name Name=VHA-E1 Synonyms=EMB2448, TUF, TUFF, VATE OrderedLocusNames=At4g11150 ORFNames=F2P3.10, T22B4.130 Annotated species Arabidopsis thaliana (Mouse-ear cress) [TaxID: 3702] Taxonomy Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core; eudicotyledons; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. References [1]   MAPPING ON GEL PubMed=18656559; DOI=10.1016/j.jprot.2008.06.012; [NCBI, EBI, Israel, Japan] Maldonado A.M., Echevarria-Zomeno S., Jean-Baptiste S., Hernandez M., Jorrin-Novo J.V. ''Evaluation of three different protocols of protein extraction for Arabidopsis thaliana leaf proteome analysis by two-dimensional electrophoresis'' J. Proteomics 71(4):461-472 (2008) 2D PAGE maps for identified proteins How to interpret a protein PHENOL_2 {Phenol 2} Arabidopsis thaliana (Mouse-ear cress) Tissue: Leaf   map experimental info   PHENOL_2 MAP LOCATIONS: SPOT 66: pI=6.67; Mw=33110   [identification data] IDENTIFICATION: SPOT 66: SeqCov=51%. Mascot (Protein score/CI%=193/100, Total ion score/CI%=30/98.28) [1]. MAPPING (identification): SPOT 66: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1]. TCA-ACETONE_3 {TCA-Acetone 3} Arabidopsis thaliana (Mouse-ear cress) Tissue: Leaf   map experimental info   TCA-ACETONE_3 MAP LOCATIONS: SPOT 66: pI=6.67; Mw=33110   [identification data] IDENTIFICATION: SPOT 66: SeqCov=51%. Mascot (Protein score/CI%=193/100, Total ion score/CI%=30/98.28) [1]. MAPPING (identification): SPOT 66: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1]. TCA-ACETONE-PHENOL_3 {TCA-Acetone-Phenol 3} Arabidopsis thaliana (Mouse-ear cress) Tissue: Leaf   map experimental info   TCA-ACETONE-PHENOL_3 MAP LOCATIONS: SPOT 66: pI=6.67; Mw=33110   [identification data] IDENTIFICATION: SPOT 66: SeqCov=51%. Mascot (Protein score/CI%=193/100, Total ion score/CI%=30/98.28) [1]. MAPPING (identification): SPOT 66: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1]. Copyright Data from Dr. Jesus V. Jorrin-Novo, University of Cordoba, Spain Cross-references UniProtKB/Swiss-Prot Q39258; VATE1_ARATH. World-2DPAGE Repository Q39258; VATE1_ARATH. 2D PAGE maps for identified proteins How to interpret a protein map You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw. Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly. Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed. External data extracted from UniProtKB/Swiss-Prot Extracted from UniProtKB/Swiss-Prot, release: 2011_10 Entry name VATE1_ARATH Primary accession number Q39258 Secondary accession number(s) O82502 Sequence was last modified on  January 24, 2001 (version 2) Annotations were last modified on  September 21, 2011 (version 94) Name and origin of the protein Description RecName: Full=V-type proton ATPase subunit E1; Short=V-ATPase subunit E1; AltName: Full=Protein EMBRYO DEFECTIVE 2448; AltName: Full=Vacuolar H(+)-ATPase subunit E isoform 1; AltName: Full=Vacuolar proton pump subunit E1; Gene name Name=VHA-E1 Synonyms=EMB2448, TUF, TUFF, VATE OrderedLocusNames=At4g11150 ORFNames=F2P3.10, T22B4.130 Encoded on Name=VHA-E1; Synonyms=EMB2448, TUF, TUFF, VATE; OrderedLocusNames=At4g11150; ORFNames=F2P3.10, T22B4.130 Keywords Coiled coil; Complete proteome; Hydrogen ion transport; Ion transport; Membrane; Reference proteome; Transport; Vacuole. Copyright Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License Cross-references EMBL X92117; CAA63086.1; -; mRNA EMBL AF080120; AAC35545.1; -; Genomic_DNA EMBL AL049876; CAB43050.1; -; Genomic_DNA EMBL AL161531; CAB81216.1; -; Genomic_DNA EMBL CP002687; AEE82978.1; -; Genomic_DNA EMBL AY065119; AAL38295.1; -; mRNA EMBL AY081632; AAM10194.1; -; mRNA IPI IPI00541951; -; . PIR T01918; T01918; . RefSeq NP_192853.1; NM_117185.4; . UniGene At.23873; -; . ProteinModelPortal Q39258; -; . SMR Q39258; 87-226; . IntAct Q39258; 1; . STRING Q39258; -; . TCDB 3.A.2.2.5; H+- or Na+-translocating F-type; V-type and A-type ATPase (F-ATPase) superfamily; . World-2DPAGE 0003:Q39258; -; . PRIDE Q39258; -; . EnsemblPlants AT4G11150.1; AT4G11150.1; AT4G11150; . GeneID 826716; -; . GenomeReviews CT486007_GR; AT4G11150; . KEGG ath:AT4G11150; -; . NMPDR fig|3702.1.peg.18781; -; . TAIR At4g11150; -; . eggNOG KOG1664; -; . GeneTree EPGT00070000028960; -; . HOGENOM HBG525538; -; . InParanoid Q39258; -; . OMA QQRQKIM; -; . PhylomeDB Q39258; -; . ProtClustDB CLSN2682633; -; . ArrayExpress Q39258; -; . Genevestigator Q39258; -; . GermOnline AT4G11150; Arabidopsis thaliana; . GO GO:0022626; C:cytosolic ribosome; IDA:TAIR; . GO GO:0009705; C:plant-type vacuole membrane; IDA:TAIR; . GO GO:0033178; C:proton-transporting two-sector ATPase complex; catalytic domain; IEA:InterPro GO GO:0046961; F:proton-transporting ATPase activity; rotational mechanism; TAS:TAIR GO GO:0015991; P:ATP hydrolysis coupled proton transport; IEA:InterPro; . GO GO:0042742; P:defense response to bacterium; IEP:TAIR; . GO GO:0009793; P:embryo development ending in seed dormancy; IMP:TAIR; . GO GO:0007030; P:Golgi organization; IMP:TAIR; . GO GO:0009832; P:plant-type cell wall biogenesis; IMP:TAIR; . GO GO:0009409; P:response to cold; IEP:TAIR; . GO GO:0009651; P:response to salt stress; IEP:TAIR; . InterPro IPR002842; ATPase_V1/A1-cplx_esu; . Pfam PF01991; vATP-synt_E; 1; . World-2DPAGE Repository (search AC)